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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1042
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0024 + 178539-179418,179593-179938,180127-180244                 39   0.002
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598...    32   0.23 
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    28   3.8  
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417...    28   3.8  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    27   5.0  
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846...    27   5.0  
06_03_0028 + 15659824-15661266                                         27   6.6  
05_04_0092 + 17851085-17851346,17852778-17852860,17853891-178539...    27   6.6  
07_01_0687 - 5197349-5198665                                           27   8.7  
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911...    27   8.7  

>12_01_0024 + 178539-179418,179593-179938,180127-180244
          Length = 447

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
 Frame = +2

Query: 5   LSPLLFNIYTEYIMRIVLEDWDKGI------SVGGRKISNLRYADDT-TLLASTRDEIEV 163
           LSPLLF +  E + R++ + + +G+         G     ++YADDT  LL +++ E+  
Sbjct: 32  LSPLLFVLGGELLQRVINKAFHQGLLSKPINESSGDGFPIIQYADDTLILLKASQKEVFC 91

Query: 164 LLRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGCEVVN-SYVYLG 319
               L   A   GL +N +K+ +  ++        +  I GC++ +  + YLG
Sbjct: 92  FKAILNMFAQSTGLKVNYNKSSLYPLNMPQDKAVLLSGILGCKIGSLPFTYLG 144


>10_08_0972 +
           21958658-21958825,21959006-21959197,21959645-21959845,
           21959920-21960009,21960424-21960591,21961100-21961354,
           21961506-21961789,21961878-21962040,21962156-21962502,
           21962726-21962759
          Length = 633

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 20  FNIYTEYIMRIVLEDWDKGI--SVGGRKISNLRYADDTTLLASTRDEIE 160
           F +  +Y     +E+ D GI   VGG+ +++L YAD+  L+  +RD+ E
Sbjct: 191 FKLSIDYSCSDGIEEGDDGIWNIVGGKIVASLVYADNGALVEKSRDDSE 239


>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 238 DHHFGLITIDRKSKIQRGSLQPAKK 164
           D  FG I + R   I RGSL+PA+K
Sbjct: 432 DKFFGQIEVGRVYLISRGSLKPAQK 456


>03_02_0757 -
           10940993-10941112,10941218-10941418,10941661-10941795,
           10941948-10942088,10942214-10942405,10942624-10942748,
           10942828-10942903,10943024-10943173,10943467-10943856,
           10944078-10944227,10944430-10944710,10945034-10945230,
           10945836-10946035,10946422-10946469,10946566-10946688,
           10946771-10946882,10946988-10947103,10947526-10947660
          Length = 963

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 275 HIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTR 382
           HI GC+ +  ++Y     T A   E  +R+ C ++R
Sbjct: 107 HILGCQTLAKFIYSQVDNTYARNIESLVRKVCVLSR 142


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -1

Query: 261 WLMLARSTIIILVLSRLIAXXXXXXXXXXXXXXXXXXXXVDAKRVVSSAYLKFDIFRPPT 82
           W  +  S +I+L LS ++A                     +A+       +  D+FRPPT
Sbjct: 273 WFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETQEEAQEETGWKLVHGDVFRPPT 332

Query: 81  DIPL 70
           +  L
Sbjct: 333 NSDL 336


>08_02_1543 +
           27783063-27783182,27784321-27784485,27784577-27784686,
           27784771-27784876,27784952-27785050,27785450-27786607
          Length = 585

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -1

Query: 261 WLMLARSTIIILVLSRLIAXXXXXXXXXXXXXXXXXXXXVDAKRVVSSAYLKFDIFRPPT 82
           W  +  S +I+L LS ++A                     +A+       +  D+FRPPT
Sbjct: 223 WFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETEEEAQEETGWKLVHGDVFRPPT 282

Query: 81  DIPL 70
           +  L
Sbjct: 283 NSDL 286


>06_03_0028 + 15659824-15661266
          Length = 480

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +2

Query: 122 DTTLLASTRDEIEVLLR----RLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGC 289
           D   LA   DE+ V L     +LE TAL  G    + K K  +  + N+   E Q     
Sbjct: 69  DIRALADRVDEVLVQLAELQDKLEATALKIGKKTKKRKGKGKLQQQENMTMTEFQRFLED 128

Query: 290 EVVN 301
           EV++
Sbjct: 129 EVIH 132


>05_04_0092 +
           17851085-17851346,17852778-17852860,17853891-17853942,
           17854054-17854179,17854291-17854373,17855127-17855309,
           17855731-17855947,17856156-17856299,17856375-17856446,
           17857166-17857230,17857517-17857584,17857968-17858007,
           17858843-17859013
          Length = 521

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 211 DRKSKIQRGSLQPAKKHLDFVSG*R--QEGSIIGVSQI*YFPTTNGYSFIP 65
           D + + Q    Q A+ H   +S     Q+ S+ G  Q+ Y P  NGY + P
Sbjct: 214 DTEKERQARKAQKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQP 264


>07_01_0687 - 5197349-5198665
          Length = 438

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 325 YHQRWRLRR*DPKTLRRDKI 384
           YH RWR ++  P  +RRD I
Sbjct: 212 YHMRWRAKKALPMCVRRDAI 231


>01_01_1148 -
           9113728-9113835,9113952-9114035,9114831-9114992,
           9115120-9115224,9115584-9116216,9117412-9117496,
           9118426-9118520,9119083-9119241,9119968-9119997,
           9120100-9120306
          Length = 555

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -2

Query: 203 VQNPAR*SPAGEEAPRFRL-WLTP 135
           +++P+  + A + APRFRL W TP
Sbjct: 241 IRDPSSSAAAADAAPRFRLRWFTP 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,444
Number of Sequences: 37544
Number of extensions: 234274
Number of successful extensions: 576
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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