BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1042 (438 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_01_0024 + 178539-179418,179593-179938,180127-180244 39 0.002 10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 32 0.23 05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 28 3.8 03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 28 3.8 09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 27 5.0 08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 27 5.0 06_03_0028 + 15659824-15661266 27 6.6 05_04_0092 + 17851085-17851346,17852778-17852860,17853891-178539... 27 6.6 07_01_0687 - 5197349-5198665 27 8.7 01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 27 8.7 >12_01_0024 + 178539-179418,179593-179938,180127-180244 Length = 447 Score = 38.7 bits (86), Expect = 0.002 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 8/113 (7%) Frame = +2 Query: 5 LSPLLFNIYTEYIMRIVLEDWDKGI------SVGGRKISNLRYADDT-TLLASTRDEIEV 163 LSPLLF + E + R++ + + +G+ G ++YADDT LL +++ E+ Sbjct: 32 LSPLLFVLGGELLQRVINKAFHQGLLSKPINESSGDGFPIIQYADDTLILLKASQKEVFC 91 Query: 164 LLRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGCEVVN-SYVYLG 319 L A GL +N +K+ + ++ + I GC++ + + YLG Sbjct: 92 FKAILNMFAQSTGLKVNYNKSSLYPLNMPQDKAVLLSGILGCKIGSLPFTYLG 144 >10_08_0972 + 21958658-21958825,21959006-21959197,21959645-21959845, 21959920-21960009,21960424-21960591,21961100-21961354, 21961506-21961789,21961878-21962040,21962156-21962502, 21962726-21962759 Length = 633 Score = 31.9 bits (69), Expect = 0.23 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +2 Query: 20 FNIYTEYIMRIVLEDWDKGI--SVGGRKISNLRYADDTTLLASTRDEIE 160 F + +Y +E+ D GI VGG+ +++L YAD+ L+ +RD+ E Sbjct: 191 FKLSIDYSCSDGIEEGDDGIWNIVGGKIVASLVYADNGALVEKSRDDSE 239 >05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-563327, 563716-566278 Length = 1016 Score = 27.9 bits (59), Expect = 3.8 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 238 DHHFGLITIDRKSKIQRGSLQPAKK 164 D FG I + R I RGSL+PA+K Sbjct: 432 DKFFGQIEVGRVYLISRGSLKPAQK 456 >03_02_0757 - 10940993-10941112,10941218-10941418,10941661-10941795, 10941948-10942088,10942214-10942405,10942624-10942748, 10942828-10942903,10943024-10943173,10943467-10943856, 10944078-10944227,10944430-10944710,10945034-10945230, 10945836-10946035,10946422-10946469,10946566-10946688, 10946771-10946882,10946988-10947103,10947526-10947660 Length = 963 Score = 27.9 bits (59), Expect = 3.8 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +2 Query: 275 HIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTR 382 HI GC+ + ++Y T A E +R+ C ++R Sbjct: 107 HILGCQTLAKFIYSQVDNTYARNIESLVRKVCVLSR 142 >09_06_0252 + 21867179-21867283,21868362-21868526,21868621-21868730, 21868802-21868904,21868998-21869110,21869204-21869357, 21869476-21870633 Length = 635 Score = 27.5 bits (58), Expect = 5.0 Identities = 15/64 (23%), Positives = 25/64 (39%) Frame = -1 Query: 261 WLMLARSTIIILVLSRLIAXXXXXXXXXXXXXXXXXXXXVDAKRVVSSAYLKFDIFRPPT 82 W + S +I+L LS ++A +A+ + D+FRPPT Sbjct: 273 WFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETQEEAQEETGWKLVHGDVFRPPT 332 Query: 81 DIPL 70 + L Sbjct: 333 NSDL 336 >08_02_1543 + 27783063-27783182,27784321-27784485,27784577-27784686, 27784771-27784876,27784952-27785050,27785450-27786607 Length = 585 Score = 27.5 bits (58), Expect = 5.0 Identities = 15/64 (23%), Positives = 25/64 (39%) Frame = -1 Query: 261 WLMLARSTIIILVLSRLIAXXXXXXXXXXXXXXXXXXXXVDAKRVVSSAYLKFDIFRPPT 82 W + S +I+L LS ++A +A+ + D+FRPPT Sbjct: 223 WFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETEEEAQEETGWKLVHGDVFRPPT 282 Query: 81 DIPL 70 + L Sbjct: 283 NSDL 286 >06_03_0028 + 15659824-15661266 Length = 480 Score = 27.1 bits (57), Expect = 6.6 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Frame = +2 Query: 122 DTTLLASTRDEIEVLLR----RLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGC 289 D LA DE+ V L +LE TAL G + K K + + N+ E Q Sbjct: 69 DIRALADRVDEVLVQLAELQDKLEATALKIGKKTKKRKGKGKLQQQENMTMTEFQRFLED 128 Query: 290 EVVN 301 EV++ Sbjct: 129 EVIH 132 >05_04_0092 + 17851085-17851346,17852778-17852860,17853891-17853942, 17854054-17854179,17854291-17854373,17855127-17855309, 17855731-17855947,17856156-17856299,17856375-17856446, 17857166-17857230,17857517-17857584,17857968-17858007, 17858843-17859013 Length = 521 Score = 27.1 bits (57), Expect = 6.6 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -3 Query: 211 DRKSKIQRGSLQPAKKHLDFVSG*R--QEGSIIGVSQI*YFPTTNGYSFIP 65 D + + Q Q A+ H +S Q+ S+ G Q+ Y P NGY + P Sbjct: 214 DTEKERQARKAQKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQP 264 >07_01_0687 - 5197349-5198665 Length = 438 Score = 26.6 bits (56), Expect = 8.7 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +1 Query: 325 YHQRWRLRR*DPKTLRRDKI 384 YH RWR ++ P +RRD I Sbjct: 212 YHMRWRAKKALPMCVRRDAI 231 >01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992, 9115120-9115224,9115584-9116216,9117412-9117496, 9118426-9118520,9119083-9119241,9119968-9119997, 9120100-9120306 Length = 555 Score = 26.6 bits (56), Expect = 8.7 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = -2 Query: 203 VQNPAR*SPAGEEAPRFRL-WLTP 135 +++P+ + A + APRFRL W TP Sbjct: 241 IRDPSSSAAAADAAPRFRLRWFTP 264 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,866,444 Number of Sequences: 37544 Number of extensions: 234274 Number of successful extensions: 576 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 576 length of database: 14,793,348 effective HSP length: 76 effective length of database: 11,940,004 effective search space used: 823860276 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -