Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1042
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0024 + 178539-179418,179593-179938,180127-180244 39 0.002
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 32 0.23
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 28 3.8
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417... 28 3.8
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 27 5.0
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 27 5.0
06_03_0028 + 15659824-15661266 27 6.6
05_04_0092 + 17851085-17851346,17852778-17852860,17853891-178539... 27 6.6
07_01_0687 - 5197349-5198665 27 8.7
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 27 8.7
>12_01_0024 + 178539-179418,179593-179938,180127-180244
Length = 447
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 8/113 (7%)
Frame = +2
Query: 5 LSPLLFNIYTEYIMRIVLEDWDKGI------SVGGRKISNLRYADDT-TLLASTRDEIEV 163
LSPLLF + E + R++ + + +G+ G ++YADDT LL +++ E+
Sbjct: 32 LSPLLFVLGGELLQRVINKAFHQGLLSKPINESSGDGFPIIQYADDTLILLKASQKEVFC 91
Query: 164 LLRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGCEVVN-SYVYLG 319
L A GL +N +K+ + ++ + I GC++ + + YLG
Sbjct: 92 FKAILNMFAQSTGLKVNYNKSSLYPLNMPQDKAVLLSGILGCKIGSLPFTYLG 144
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +2
Query: 20 FNIYTEYIMRIVLEDWDKGI--SVGGRKISNLRYADDTTLLASTRDEIE 160
F + +Y +E+ D GI VGG+ +++L YAD+ L+ +RD+ E
Sbjct: 191 FKLSIDYSCSDGIEEGDDGIWNIVGGKIVASLVYADNGALVEKSRDDSE 239
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 238 DHHFGLITIDRKSKIQRGSLQPAKK 164
D FG I + R I RGSL+PA+K
Sbjct: 432 DKFFGQIEVGRVYLISRGSLKPAQK 456
>03_02_0757 -
10940993-10941112,10941218-10941418,10941661-10941795,
10941948-10942088,10942214-10942405,10942624-10942748,
10942828-10942903,10943024-10943173,10943467-10943856,
10944078-10944227,10944430-10944710,10945034-10945230,
10945836-10946035,10946422-10946469,10946566-10946688,
10946771-10946882,10946988-10947103,10947526-10947660
Length = 963
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 275 HIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTR 382
HI GC+ + ++Y T A E +R+ C ++R
Sbjct: 107 HILGCQTLAKFIYSQVDNTYARNIESLVRKVCVLSR 142
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = -1
Query: 261 WLMLARSTIIILVLSRLIAXXXXXXXXXXXXXXXXXXXXVDAKRVVSSAYLKFDIFRPPT 82
W + S +I+L LS ++A +A+ + D+FRPPT
Sbjct: 273 WFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETQEEAQEETGWKLVHGDVFRPPT 332
Query: 81 DIPL 70
+ L
Sbjct: 333 NSDL 336
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = -1
Query: 261 WLMLARSTIIILVLSRLIAXXXXXXXXXXXXXXXXXXXXVDAKRVVSSAYLKFDIFRPPT 82
W + S +I+L LS ++A +A+ + D+FRPPT
Sbjct: 223 WFSIVNSLMIVLFLSGMVAMIMLRTLYRDISRYNQLETEEEAQEETGWKLVHGDVFRPPT 282
Query: 81 DIPL 70
+ L
Sbjct: 283 NSDL 286
>06_03_0028 + 15659824-15661266
Length = 480
Score = 27.1 bits (57), Expect = 6.6
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 122 DTTLLASTRDEIEVLLR----RLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGC 289
D LA DE+ V L +LE TAL G + K K + + N+ E Q
Sbjct: 69 DIRALADRVDEVLVQLAELQDKLEATALKIGKKTKKRKGKGKLQQQENMTMTEFQRFLED 128
Query: 290 EVVN 301
EV++
Sbjct: 129 EVIH 132
>05_04_0092 +
17851085-17851346,17852778-17852860,17853891-17853942,
17854054-17854179,17854291-17854373,17855127-17855309,
17855731-17855947,17856156-17856299,17856375-17856446,
17857166-17857230,17857517-17857584,17857968-17858007,
17858843-17859013
Length = 521
Score = 27.1 bits (57), Expect = 6.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 211 DRKSKIQRGSLQPAKKHLDFVSG*R--QEGSIIGVSQI*YFPTTNGYSFIP 65
D + + Q Q A+ H +S Q+ S+ G Q+ Y P NGY + P
Sbjct: 214 DTEKERQARKAQKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQP 264
>07_01_0687 - 5197349-5198665
Length = 438
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 325 YHQRWRLRR*DPKTLRRDKI 384
YH RWR ++ P +RRD I
Sbjct: 212 YHMRWRAKKALPMCVRRDAI 231
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 203 VQNPAR*SPAGEEAPRFRL-WLTP 135
+++P+ + A + APRFRL W TP
Sbjct: 241 IRDPSSSAAAADAAPRFRLRWFTP 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,444
Number of Sequences: 37544
Number of extensions: 234274
Number of successful extensions: 576
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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