Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1042
         (438 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    42   1e-05
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    27   0.22 
AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic pr...    26   0.67 
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   3.6  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   4.8  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            22   8.3  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   8.3  

>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 41.9 bits (94), Expect = 1e-05
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
 Frame = +2

Query: 2   ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNLRYADDTTLLASTR--DEIEVL--- 166
           +L P L+N+  + ++R+ +        V G +I  + YADD  LL      D+IE+L   
Sbjct: 610 VLGPTLWNLMYDGVLRVAM--------VEGARI--IGYADDIVLLVEGNCVDDIEILVSS 659

Query: 167 -LRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHIAGCEVVNSYVYLGSTITNAGG 343
            +R ++    D GL I   KT+ ++V     +   +QH A   V +  V+   T+   G 
Sbjct: 660 QIRIIDRWMTDNGLKIAPTKTEFIMVS----SHQRIQHGA-IRVGDHVVHSSRTLKYLGM 714

Query: 344 CEDEIRRRCAVTRSSVERLTKIW 412
             D+     +  R +VER TK+W
Sbjct: 715 VLDDRLEYTSHIRYAVERATKLW 737


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 27.5 bits (58), Expect = 0.22
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 113 YADDTTLLASTRDEIEVLLRRLETTALDFGLAINRDKTKMMIVDRANINQPEV 271
           YADD +++ ++  +IE++    E      G  +N DKT  + V     N  +V
Sbjct: 683 YADDISVVTTSSQKIELVREAFEAFGRVSGARLNVDKTIALDVGYTTSNAIQV 735


>AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic
           protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 0.67
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 268 FRLVDVSTIYDHHFGLITIDRKSKIQRGSLQPAKKHLDFV 149
           F LVD  T+  +  G  + D    ++R   QP K H  FV
Sbjct: 150 FLLVDTKTLAINESGTASFDVMPAVERWLRQPRKNHGLFV 189


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 91  TTNGYSFIPIFKNYPH 44
           T + YSF+ I KN PH
Sbjct: 82  TNDDYSFLQIEKNEPH 97


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 95  KISNLRYADDTTLLASTRDEIEVLLRRLET 184
           +++NL+     T    T++EIE L +++ET
Sbjct: 723 ELNNLKQRLAQTSFQQTKEEIEELNKKIET 752


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 8    SPLLFNIYTEYIM 46
            SPL   IYTEY+M
Sbjct: 2189 SPLRNGIYTEYLM 2201


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 8    SPLLFNIYTEYIM 46
            SPL   IYTEY+M
Sbjct: 2199 SPLRNGIYTEYLM 2211


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 452,379
Number of Sequences: 2352
Number of extensions: 8470
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 36568146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)