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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1042
         (438 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...    41   6e-04
AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein ...    31   0.91 
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    31   0.91 
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    31   0.91 
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    31   0.91 
AE014297-2821|ABC66183.1|  212|Drosophila melanogaster CG34008-P...    29   2.8  
AY118408-1|AAM48437.1| 1005|Drosophila melanogaster RE63030p pro...    29   3.7  
AE014296-1428|AAF50437.2| 1005|Drosophila melanogaster CG7112-PA...    29   3.7  
AY069497-1|AAL39642.1|  602|Drosophila melanogaster LD22344p pro...    28   4.8  
AE014134-1751|AAF52846.3|  602|Drosophila melanogaster CG4747-PA...    28   4.8  

>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
           Drosophila melanogasterDNA for type II retrotransposable
           element  R2Dm.  ).
          Length = 1057

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 25/73 (34%), Positives = 38/73 (52%)
 Frame = +2

Query: 5   LSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNLRYADDTTLLASTRDEIEVLLRRLET 184
           LSP+LFN+  + ++R +  +   G  VG    +   +ADD  L A TR  ++VLL +   
Sbjct: 545 LSPILFNLVMDRLLRTLPSEI--GAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLD 602

Query: 185 TALDFGLAINRDK 223
                GL +N DK
Sbjct: 603 FLSIVGLKLNADK 615


>AM040243-1|CAJ13339.1|  656|Drosophila melanogaster pol protein
           protein.
          Length = 656

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +2

Query: 2   ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
           IL P+L++IY+  +   +++D+ + IS      +N+    YADDT +L+ ++
Sbjct: 247 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 298


>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +2

Query: 2   ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
           IL P+L++IY+  +   +++D+ + IS      +N+    YADDT +L+ ++
Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +2

Query: 2   ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
           IL P+L++IY+  +   +++D+ + IS      +N+    YADDT +L+ ++
Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = +2

Query: 2   ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
           IL P+L++IY+  +   +++D+ + IS      +N+    YADDT +L+ ++
Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745


>AE014297-2821|ABC66183.1|  212|Drosophila melanogaster CG34008-PA
           protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 WRLPRWILDLRSIVIRPK 230
           W LP+W+LDLR I  R K
Sbjct: 181 WELPKWLLDLRQIDDRNK 198


>AY118408-1|AAM48437.1| 1005|Drosophila melanogaster RE63030p
           protein.
          Length = 1005

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 191 LDFGLAINRDKTKMMIVDRANINQPEVQHI-AGCEVVNSYVYLGSTITNAGGCEDEIRR 364
           +D   A   +K   M  ++ +    EV  I  GC + +   YLG+   NA   E E+ R
Sbjct: 34  IDASPACVEEKQDAMKPEKGDTTDEEVSEIDQGCTIFSGVTYLGAANINAPKSETEVYR 92


>AE014296-1428|AAF50437.2| 1005|Drosophila melanogaster CG7112-PA
           protein.
          Length = 1005

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 191 LDFGLAINRDKTKMMIVDRANINQPEVQHI-AGCEVVNSYVYLGSTITNAGGCEDEIRR 364
           +D   A   +K   M  ++ +    EV  I  GC + +   YLG+   NA   E E+ R
Sbjct: 34  IDASPACVEEKQDAMKPEKGDTTDEEVSEIDQGCTIFSGVTYLGAANINAPKSETEVYR 92


>AY069497-1|AAL39642.1|  602|Drosophila melanogaster LD22344p
           protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 170 RRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHI 280
           RR+ET AL   +A  R    + ++DR  + +PE Q I
Sbjct: 261 RRVETDALLASIAAKRAPNAIALLDRPVVTRPEAQVI 297


>AE014134-1751|AAF52846.3|  602|Drosophila melanogaster CG4747-PA
           protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 170 RRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHI 280
           RR+ET AL   +A  R    + ++DR  + +PE Q I
Sbjct: 261 RRVETDALLASIAAKRAPNAIALLDRPVVTRPEAQVI 297


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,465,030
Number of Sequences: 53049
Number of extensions: 386748
Number of successful extensions: 820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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