Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1042
(438 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 41 6e-04
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 31 0.91
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 31 0.91
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 31 0.91
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 31 0.91
AE014297-2821|ABC66183.1| 212|Drosophila melanogaster CG34008-P... 29 2.8
AY118408-1|AAM48437.1| 1005|Drosophila melanogaster RE63030p pro... 29 3.7
AE014296-1428|AAF50437.2| 1005|Drosophila melanogaster CG7112-PA... 29 3.7
AY069497-1|AAL39642.1| 602|Drosophila melanogaster LD22344p pro... 28 4.8
AE014134-1751|AAF52846.3| 602|Drosophila melanogaster CG4747-PA... 28 4.8
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/73 (34%), Positives = 38/73 (52%)
Frame = +2
Query: 5 LSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNLRYADDTTLLASTRDEIEVLLRRLET 184
LSP+LFN+ + ++R + + G VG + +ADD L A TR ++VLL +
Sbjct: 545 LSPILFNLVMDRLLRTLPSEI--GAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLD 602
Query: 185 TALDFGLAINRDK 223
GL +N DK
Sbjct: 603 FLSIVGLKLNADK 615
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++
Sbjct: 247 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 298
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++
Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++
Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 30.7 bits (66), Expect = 0.91
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148
IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++
Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745
>AE014297-2821|ABC66183.1| 212|Drosophila melanogaster CG34008-PA
protein.
Length = 212
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 177 WRLPRWILDLRSIVIRPK 230
W LP+W+LDLR I R K
Sbjct: 181 WELPKWLLDLRQIDDRNK 198
>AY118408-1|AAM48437.1| 1005|Drosophila melanogaster RE63030p
protein.
Length = 1005
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 191 LDFGLAINRDKTKMMIVDRANINQPEVQHI-AGCEVVNSYVYLGSTITNAGGCEDEIRR 364
+D A +K M ++ + EV I GC + + YLG+ NA E E+ R
Sbjct: 34 IDASPACVEEKQDAMKPEKGDTTDEEVSEIDQGCTIFSGVTYLGAANINAPKSETEVYR 92
>AE014296-1428|AAF50437.2| 1005|Drosophila melanogaster CG7112-PA
protein.
Length = 1005
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 191 LDFGLAINRDKTKMMIVDRANINQPEVQHI-AGCEVVNSYVYLGSTITNAGGCEDEIRR 364
+D A +K M ++ + EV I GC + + YLG+ NA E E+ R
Sbjct: 34 IDASPACVEEKQDAMKPEKGDTTDEEVSEIDQGCTIFSGVTYLGAANINAPKSETEVYR 92
>AY069497-1|AAL39642.1| 602|Drosophila melanogaster LD22344p
protein.
Length = 602
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 170 RRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHI 280
RR+ET AL +A R + ++DR + +PE Q I
Sbjct: 261 RRVETDALLASIAAKRAPNAIALLDRPVVTRPEAQVI 297
>AE014134-1751|AAF52846.3| 602|Drosophila melanogaster CG4747-PA
protein.
Length = 602
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 170 RRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHI 280
RR+ET AL +A R + ++DR + +PE Q I
Sbjct: 261 RRVETDALLASIAAKRAPNAIALLDRPVVTRPEAQVI 297
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,465,030
Number of Sequences: 53049
Number of extensions: 386748
Number of successful extensions: 820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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