BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1042 (438 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 41 6e-04 AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 31 0.91 AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 31 0.91 AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 31 0.91 AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 31 0.91 AE014297-2821|ABC66183.1| 212|Drosophila melanogaster CG34008-P... 29 2.8 AY118408-1|AAM48437.1| 1005|Drosophila melanogaster RE63030p pro... 29 3.7 AE014296-1428|AAF50437.2| 1005|Drosophila melanogaster CG7112-PA... 29 3.7 AY069497-1|AAL39642.1| 602|Drosophila melanogaster LD22344p pro... 28 4.8 AE014134-1751|AAF52846.3| 602|Drosophila melanogaster CG4747-PA... 28 4.8 >X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Drosophila melanogasterDNA for type II retrotransposable element R2Dm. ). Length = 1057 Score = 41.1 bits (92), Expect = 6e-04 Identities = 25/73 (34%), Positives = 38/73 (52%) Frame = +2 Query: 5 LSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNLRYADDTTLLASTRDEIEVLLRRLET 184 LSP+LFN+ + ++R + + G VG + +ADD L A TR ++VLL + Sbjct: 545 LSPILFNLVMDRLLRTLPSEI--GAKVGNAITNAAAFADDLVLFAETRMGLQVLLDKTLD 602 Query: 185 TALDFGLAINRDK 223 GL +N DK Sbjct: 603 FLSIVGLKLNADK 615 >AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein protein. Length = 656 Score = 30.7 bits (66), Expect = 0.91 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148 IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++ Sbjct: 247 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 298 >AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein protein. Length = 1103 Score = 30.7 bits (66), Expect = 0.91 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148 IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++ Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745 >AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein protein. Length = 1103 Score = 30.7 bits (66), Expect = 0.91 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148 IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++ Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745 >AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein protein. Length = 1103 Score = 30.7 bits (66), Expect = 0.91 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Frame = +2 Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNL---RYADDTTLLASTR 148 IL P+L++IY+ + +++D+ + IS +N+ YADDT +L+ ++ Sbjct: 694 ILGPVLYSIYSSDMPYPIVKDYMRNISFPDYHPTNIILATYADDTIILSRSK 745 >AE014297-2821|ABC66183.1| 212|Drosophila melanogaster CG34008-PA protein. Length = 212 Score = 29.1 bits (62), Expect = 2.8 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +3 Query: 177 WRLPRWILDLRSIVIRPK 230 W LP+W+LDLR I R K Sbjct: 181 WELPKWLLDLRQIDDRNK 198 >AY118408-1|AAM48437.1| 1005|Drosophila melanogaster RE63030p protein. Length = 1005 Score = 28.7 bits (61), Expect = 3.7 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +2 Query: 191 LDFGLAINRDKTKMMIVDRANINQPEVQHI-AGCEVVNSYVYLGSTITNAGGCEDEIRR 364 +D A +K M ++ + EV I GC + + YLG+ NA E E+ R Sbjct: 34 IDASPACVEEKQDAMKPEKGDTTDEEVSEIDQGCTIFSGVTYLGAANINAPKSETEVYR 92 >AE014296-1428|AAF50437.2| 1005|Drosophila melanogaster CG7112-PA protein. Length = 1005 Score = 28.7 bits (61), Expect = 3.7 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = +2 Query: 191 LDFGLAINRDKTKMMIVDRANINQPEVQHI-AGCEVVNSYVYLGSTITNAGGCEDEIRR 364 +D A +K M ++ + EV I GC + + YLG+ NA E E+ R Sbjct: 34 IDASPACVEEKQDAMKPEKGDTTDEEVSEIDQGCTIFSGVTYLGAANINAPKSETEVYR 92 >AY069497-1|AAL39642.1| 602|Drosophila melanogaster LD22344p protein. Length = 602 Score = 28.3 bits (60), Expect = 4.8 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 170 RRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHI 280 RR+ET AL +A R + ++DR + +PE Q I Sbjct: 261 RRVETDALLASIAAKRAPNAIALLDRPVVTRPEAQVI 297 >AE014134-1751|AAF52846.3| 602|Drosophila melanogaster CG4747-PA protein. Length = 602 Score = 28.3 bits (60), Expect = 4.8 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +2 Query: 170 RRLETTALDFGLAINRDKTKMMIVDRANINQPEVQHI 280 RR+ET AL +A R + ++DR + +PE Q I Sbjct: 261 RRVETDALLASIAAKRAPNAIALLDRPVVTRPEAQVI 297 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,465,030 Number of Sequences: 53049 Number of extensions: 386748 Number of successful extensions: 820 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 819 length of database: 24,988,368 effective HSP length: 78 effective length of database: 20,850,546 effective search space used: 1396986582 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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