Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1042
(438 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 58 3e-09
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 58 3e-09
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 56 1e-08
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 54 6e-08
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 51 4e-07
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.16
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 30 0.85
AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical... 29 2.0
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 2.6
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 2.6
AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical... 28 3.4
AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical ... 28 3.4
Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical p... 27 6.0
Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical pr... 27 6.0
AJ002895-1|CAA05730.1| 50|Caenorhabditis elegans protein tyros... 27 6.0
U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation fact... 27 7.9
U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation fact... 27 7.9
U22833-2|AAA64322.2| 707|Caenorhabditis elegans Temporarily ass... 27 7.9
U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation fact... 27 7.9
U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation fact... 27 7.9
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 58.0 bits (134), Expect = 3e-09
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Frame = +2
Query: 5 LSPLLFNIYTEYIMRIV--------LEDWDK--GISVGGRKISNLRYADDTTLLASTRDE 154
+SP LF+ E++ R + ED+D G+ V GR ++NLR+ADD L+A+ +
Sbjct: 754 ISPNLFSACLEHVFRKLSWIELKGEAEDYDTIPGMRVNGRNLTNLRFADDIVLIANHPNI 813
Query: 155 IEVLLRRLETTALDFGLAINRDKTKMM---IVDRANINQPEVQHIAGCEVVNSYVYLGST 325
+L+ L + GL IN KTK++ D + + + V+ Y+YLG
Sbjct: 814 ASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKVYFGSPSPTTQLDDVDEYIYLGRQ 873
Query: 326 ITNAGGCEDEI--RRRCA-VTRSSVERLTKIWRDRRITKN 436
I EI RRR A + ++ T D++I N
Sbjct: 874 INAQNNLMPEIHRRRRAAWAAFNGIKNTTDSITDKKIRAN 913
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 58.0 bits (134), Expect = 3e-09
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Frame = +2
Query: 5 LSPLLFNIYTEYIMRIV--------LEDWDK--GISVGGRKISNLRYADDTTLLASTRDE 154
+SP LF+ E++ R + ED+D G+ V GR ++NLR+ADD L+A+ +
Sbjct: 493 ISPNLFSACLEHVFRKLSWIELKGEAEDYDTIPGMRVNGRNLTNLRFADDIVLIANHPNI 552
Query: 155 IEVLLRRLETTALDFGLAINRDKTKMM---IVDRANINQPEVQHIAGCEVVNSYVYLGST 325
+L+ L + GL IN KTK++ D + + + V+ Y+YLG
Sbjct: 553 ASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKVYFGSPSPTTQLDDVDEYIYLGRQ 612
Query: 326 ITNAGGCEDEI--RRRCA-VTRSSVERLTKIWRDRRITKN 436
I EI RRR A + ++ T D++I N
Sbjct: 613 INAQNNLMPEIHRRRRAAWAAFNGIKNTTDSITDKKIRAN 652
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 56.0 bits (129), Expect = 1e-08
Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Frame = +2
Query: 5 LSPLLFNIYTEYIMRIV--------LEDWDK--GISVGGRKISNLRYADDTTLLASTRDE 154
+SP LF+ E++ R + ED++ G+ V G+ ++NLR+ADD L+A+ +
Sbjct: 105 ISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIPGMRVNGKNLTNLRFADDIVLIANHPNT 164
Query: 155 IEVLLRRLETTALDFGLAINRDKTKMM---IVDRANINQPEVQHIAGCEVVNSYVYLGST 325
+L+ L + GL IN KTK++ D + + + V+ Y+YLG
Sbjct: 165 ASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKVYFGNPSSTTQLDDVDEYIYLGRQ 224
Query: 326 ITNAGGCEDEI--RRRCA-VTRSSVERLTKIWRDRRITKN 436
I EI RRR A + ++ T D++I N
Sbjct: 225 INAQNNLMPEIHRRRRAAWAAFNGIKNTTDSITDKKIRAN 264
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 53.6 bits (123), Expect = 6e-08
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Frame = +2
Query: 71 KGISVGGRKISNLRYADDTTLLASTRDEIEVLLRRLETTALDFGLAINRDKTKMM----- 235
+GI V G+ ++NLR+ADD L+A +L L GL IN KTK++
Sbjct: 558 EGIRVNGQNLTNLRFADDIVLVAHNPRTASQMLTELVEKCSSVGLKINTGKTKVLRNRFA 617
Query: 236 IVDRANINQPEVQHIAGCEVVNSYVYLGSTITNAGGCEDEIRRR 367
+ I P +I + VN Y+YLG I ++ E+ RR
Sbjct: 618 YKRKVEIRCPNTTNII-IDDVNEYIYLGRQINDSNNLLPELHRR 660
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein
F20B4.7 protein.
Length = 891
Score = 50.8 bits (116), Expect = 4e-07
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Frame = +2
Query: 5 LSPLLFNIYTEYIMRIV--------LEDWDK--GISVGGRKISNLRYADDTTLLASTRDE 154
+SP LF+ E++ R + ED+D G+ V GR ++NLR+ADD L+A+ +
Sbjct: 583 ISPNLFSACLEHVFRKLSWIELKGEAEDYDTIPGMRVNGRNLTNLRFADDIVLIANHPNT 642
Query: 155 IEVLLRRLETTALDFGLAINRDKTKMM---IVDRANINQPEVQHIAGCEVVNSYVYLGST 325
+L+ L + GL IN KTK++ D + + + V+ Y+YL +
Sbjct: 643 ASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKVYFGSPSPTTQLDDVDEYIYLNA- 701
Query: 326 ITNAGGCEDEIRRRCA-VTRSSVERLTKIWRDRRITKN 436
N E RRR A ++ T D++I N
Sbjct: 702 -QNNLMPEIHRRRRAAWAAFIGIKNTTDSITDKKIRAN 738
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 32.3 bits (70), Expect = 0.16
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = +2
Query: 2 ILSPLLFNIYTEYIMRIVLEDWDKGISVGGRKISNLRYADDTTLLAST-RDEIEVLLRRL 178
+LSPLLF IY I I+ E K++ ++ADDT L AST + E E L+
Sbjct: 82 VLSPLLFGIYVNDISSILPE-----------KVACKQFADDTKLYASTPKTESENNLQSA 130
Query: 179 ETTALDF----GLAINRDKTKMMIVDRANIN 259
+D+ L +N+ KT + V + I+
Sbjct: 131 LDAVVDWTKGSKLTLNQSKTVHVTVGKRRID 161
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 29.9 bits (64), Expect = 0.85
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 74 GISVGGRKISNLRYADDTTLLASTRDEIE 160
G + G +ISN+ + DDTT+ A ++ IE
Sbjct: 584 GNNTPGLQISNMNFPDDTTIFADKKEAIE 612
>AL117202-18|CAB57896.3| 765|Caenorhabditis elegans Hypothetical
protein Y47D3A.22 protein.
Length = 765
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +2
Query: 158 EVLLRRLETTALDFGLAINRDKTKMMIVDRANINQPEVQ-HIAGCEVVNSYVYLGSTITN 334
EV + + A + + + R+K + R + Q E++ + A C + V T
Sbjct: 679 EVRKQIADDAAREAKIEVEREKQNELNQLRKRLEQLELETNCAICMDLKIAVVFNCGHTA 738
Query: 335 AGGCEDEIRRRCAVTRSSVERLTKIW 412
C D+++++C + R ++E + I+
Sbjct: 739 CVDCADKLKKQCHICRKTIETMQPIY 764
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 114 YLKFD-IFRPPTDIPLSQSSRTIRIIYSVYILNKRGDSI 1
Y+K D +FRPP L S TI I+ S +L+ DS+
Sbjct: 1509 YMKQDALFRPPESNSLQGESLTIAIVLSDTLLDLHFDSV 1547
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 114 YLKFD-IFRPPTDIPLSQSSRTIRIIYSVYILNKRGDSI 1
Y+K D +FRPP L S TI I+ S +L+ DS+
Sbjct: 1509 YMKQDALFRPPESNSLQGESLTIAIVLSDTLLDLHFDSV 1547
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 114 YLKFD-IFRPPTDIPLSQSSRTIRIIYSVYILNKRGDSI 1
Y+K D +FRPP L S TI I+ S +L+ DS+
Sbjct: 1509 YMKQDALFRPPESNSLQGESLTIAIVLSDTLLDLHFDSV 1547
>AL117206-11|CAB60453.3| 1237|Caenorhabditis elegans Hypothetical
protein Y67A10A.3 protein.
Length = 1237
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 104 NLRYADDTTLLASTRDEIEVLLRRLETTALDF 199
N YA+ T L+STR I L+ R ET L++
Sbjct: 224 NSAYAEMTAQLSSTRQIIHSLVSRRETATLNY 255
>AF047659-7|AAY86256.1| 302|Caenorhabditis elegans Hypothetical
protein K07H8.11 protein.
Length = 302
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +2
Query: 236 IVDRANINQPEVQHIAGCEVVNSYVYLGSTITNAGGCEDEIRRRCAVTRSSVERLTKIWR 415
++D +N P+V+ I ++ + + CE R VT + + R+ K W+
Sbjct: 175 VLDGTILNHPKVREITELDLRTVESDINDAQLHQLECESISLRSSTVTNAGINRILKEWQ 234
Query: 416 D 418
D
Sbjct: 235 D 235
>Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 161 VLLRRLETTALDFGLAINRDKTKMMIVDRANI 256
++ + L DFGL++N +TKM + +A I
Sbjct: 308 LITKELNVKISDFGLSVNESETKMKSLKKAPI 339
>Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 161 VLLRRLETTALDFGLAINRDKTKMMIVDRANI 256
++ + L DFGL++N +TKM + +A I
Sbjct: 308 LITKELNVKISDFGLSVNESETKMKSLKKAPI 339
>AJ002895-1|CAA05730.1| 50|Caenorhabditis elegans protein tyrosine
kinase protein.
Length = 50
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 161 VLLRRLETTALDFGLAINRDKTKMMIVDRANI 256
++ + L DFGL++N +TKM + +A I
Sbjct: 2 LITKELNVKISDFGLSVNESETKMKSLKKAPI 33
>U93847-1|AAB58269.1| 760|Caenorhabditis elegans elongation
factor-2 kinase EFK-1B isoform protein.
Length = 760
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 361 SDLIFAASSVGDSGA*IYIAINYLASRYMLDFRLVDVSTIYDHHFGLITIDRKSKI 194
SDL+ A+ +GD GA +Y+A Y +++ R D D + ++ + ++
Sbjct: 631 SDLMEIAAEMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEEL 686
>U93846-1|AAB58268.1| 768|Caenorhabditis elegans elongation
factor-2 kinase EFK-1A isoform protein.
Length = 768
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 361 SDLIFAASSVGDSGA*IYIAINYLASRYMLDFRLVDVSTIYDHHFGLITIDRKSKI 194
SDL+ A+ +GD GA +Y+A Y +++ R D D + ++ + ++
Sbjct: 639 SDLMEIAAEMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEEL 694
>U22833-2|AAA64322.2| 707|Caenorhabditis elegans Temporarily
assigned gene nameprotein 161 protein.
Length = 707
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -3
Query: 310 YIAINYLASRYMLDFRLVDVSTIYDHHFGLITIDRKSKIQRGSLQPAKKHL 158
Y AI D RL IYDHH + + + SLQ + HL
Sbjct: 86 YEAIKEYEKMETPDERLTKAREIYDHHIMVEMLAHAHNYSKESLQHVQYHL 136
>U10414-7|AAN63383.1| 768|Caenorhabditis elegans Elongation factor
kinase protein1, isoform a protein.
Length = 768
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 361 SDLIFAASSVGDSGA*IYIAINYLASRYMLDFRLVDVSTIYDHHFGLITIDRKSKI 194
SDL+ A+ +GD GA +Y+A Y +++ R D D + ++ + ++
Sbjct: 639 SDLMEIAAEMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEEL 694
>U10414-6|AAN63384.1| 760|Caenorhabditis elegans Elongation factor
kinase protein1, isoform b protein.
Length = 760
Score = 26.6 bits (56), Expect = 7.9
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 361 SDLIFAASSVGDSGA*IYIAINYLASRYMLDFRLVDVSTIYDHHFGLITIDRKSKI 194
SDL+ A+ +GD GA +Y+A Y +++ R D D + ++ + ++
Sbjct: 631 SDLMEIAAEMGDKGAMLYMAHAYETGQHLGPNRRTDYKKSIDWYQRVVGFQEEEEL 686
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,945,046
Number of Sequences: 27780
Number of extensions: 197013
Number of successful extensions: 544
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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