Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1042
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23870.1 68417.m03432 expressed protein predicted proteins, A...    29   1.8  
At3g51450.1 68416.m05635 strictosidine synthase family protein s...    29   1.8  
At5g16520.1 68418.m01932 expressed protein                             28   2.4  
At5g24010.1 68418.m02821 protein kinase family protein contains ...    27   7.3  
At4g32000.1 68417.m04556 protein kinase family protein contains ...    27   7.3  
At3g06790.2 68416.m00807 plastid developmental protein DAG, puta...    27   7.3  
At2g25220.1 68415.m03018 protein kinase family protein  contains...    27   7.3  
At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein con...    27   7.3  
At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identi...    26   9.7  
At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identi...    26   9.7  

>At4g23870.1 68417.m03432 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 116

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 317 GSTITNAGGCEDEIRRRCAVTRSSVERLTKIWRDRRIT 430
           G     A   E+E RRRC   R S+ER+T+ W +  ++
Sbjct: 80  GEAAAKAAEEEEESRRRCRKWRPSLERITE-WPEETLS 116


>At3g51450.1 68416.m05635 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]
          Length = 371

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 248 ANINQPEVQHIAGCEVVNSYVYLGS 322
           A  + P++ HIA C+ +  Y+Y GS
Sbjct: 326 AYYHDPKLSHIATCDKIGKYLYCGS 350


>At5g16520.1 68418.m01932 expressed protein 
          Length = 608

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 175 PAKKHLDFVSG*RQEGSIIGVSQI*YFPTTNGYSFIPIFKNYPHYI 38
           P +KH+ FVSG  + GSI+  S + +  T        +F    H++
Sbjct: 280 PNEKHMSFVSGTLRNGSILDESPVTFRGTEGNILKFNLFPRIYHHL 325


>At5g24010.1 68418.m02821 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 824

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 432 LVILRSLQIFVSLSTEDLVTAQRLRISSSQ 343
           LVI  S QIF +LS++ L T  R+ +  S+
Sbjct: 193 LVIPNSAQIFSNLSSQVLETVHRINVGGSK 222


>At4g32000.1 68417.m04556 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 418

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 301 INYLASRYMLDFRLVDVSTIYDHHFGLITID 209
           + Y+A  Y+LD +L D S +Y   FG++ ++
Sbjct: 293 LGYVAPEYLLDGKLTDKSDVY--AFGVVLLE 321


>At3g06790.2 68416.m00807 plastid developmental protein DAG,
           putative similar to DAG protein, chloroplast precursor
           [Garden snapdragon] SWISS-PROT:Q38732
          Length = 244

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 290 EVVNSYVYLGSTITNAGGCEDEIRRR 367
           E++NSYV    T+T+  GCE+E +++
Sbjct: 112 EMINSYV---KTLTSVLGCEEEAKKK 134


>At2g25220.1 68415.m03018 protein kinase family protein  contains
           protein kinase domain, Pfam:PF00069
          Length = 383

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 301 INYLASRYMLDFRLVDVSTIYDHHFGLITID 209
           + Y+A  Y+LD +L D S +Y   FG++ ++
Sbjct: 261 LGYVAPEYLLDGKLTDKSDVY--AFGVVLLE 289


>At2g22070.1 68415.m02621 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 786

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 95  KISNLRYADDT-TLLASTRDEI--EVLLRRLETTALDFGLAINRDKTKMMIVDRANI 256
           +I  + Y  DT ++L    +E+  ++L    E  A+ FGL    DKT + I+    +
Sbjct: 689 EIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRV 745


>At1g66280.1 68414.m07527 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 524

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 241 YDHHFGLITIDRKSKIQRGSLQPAKKHLDFV 149
           Y++ FGL  +D K+ + R   + AK + DF+
Sbjct: 480 YNNRFGLYYVDFKNNLTRYEKESAKYYKDFL 510


>At1g66270.2 68414.m07524 beta-glucosidase (PSR3.2) nearly identical
           to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
           Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
           glucohydrolase (GI:984052) [Arabidopsis thaliana]
          Length = 522

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 241 YDHHFGLITIDRKSKIQRGSLQPAKKHLDFVS 146
           Y + FGL  +D K+ + R   + AK + DF++
Sbjct: 478 YKNRFGLYYVDFKNNLTRYEKESAKYYKDFLA 509


>At1g66270.1 68414.m07523 beta-glucosidase (PSR3.2) nearly identical
           to GI:2286069 from (Arabidopsis thaliana) (Plant Mol.
           Biol. 34 (1), 57-68 (1997)); similar to thioglucoside
           glucohydrolase (GI:984052) [Arabidopsis thaliana]
          Length = 524

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 241 YDHHFGLITIDRKSKIQRGSLQPAKKHLDFVS 146
           Y + FGL  +D K+ + R   + AK + DF++
Sbjct: 480 YKNRFGLYYVDFKNNLTRYEKESAKYYKDFLA 511


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,535,048
Number of Sequences: 28952
Number of extensions: 187463
Number of successful extensions: 485
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)