Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1040
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0894 + 7047273-7048277,7049124-7049549                           29   4.7  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   6.2  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   8.2  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   8.2  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   8.2  

>01_01_0894 + 7047273-7048277,7049124-7049549
          Length = 476

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -2

Query: 661 FRLPWPRSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPAS 494
           +RLP P S    R  PF+  H   LG+L  R +   A    PV+L   G + TV+ S A+
Sbjct: 44  WRLPLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSAA 99

Query: 493 SFE*AGVLTHLKFENRLR 440
           S + A       F +R R
Sbjct: 100 SAQEAMRARDAAFASRAR 117


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 540 LPKLAHLAPSSDLRLHRSSKPEFSPI 463
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 279 KSIVGTGYRGERLIEPSSSWFRPKFPSG 362
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 206 DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 316
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 460 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 299
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,652,372
Number of Sequences: 37544
Number of extensions: 435598
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)