Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1039
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   5.8  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   7.7  

>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -2

Query: 384 QKHFYLLLKSHLTL*NYRN*SKTVGEVCSEQRLQIFIFKISLMQ----P*WPLKNVLA-K 220
           Q+ F+LL+KS  TL  +          C ++ LQ ++     +Q    P WP++N+LA  
Sbjct: 179 QRPFFLLIKS--TLDEWTIAPLKELSHCVDKSLQFYLVAEDSVQLAEYPSWPVRNILAFA 236

Query: 219 VLRFFLTIL 193
            ++F L ++
Sbjct: 237 FIKFKLKVI 245


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 604 FYGVFPPKKIDSEWEWNRGLFYQE 675
           F    P  K+D    WN GL Y +
Sbjct: 493 FLSCLPAPKVDDAANWNAGLLYSK 516


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,416
Number of Sequences: 5004
Number of extensions: 61738
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)