Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1039
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024842-5|AAF59621.1|  128|Caenorhabditis elegans Hypothetical ...    28   5.4  
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    28   7.1  

>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical
           protein F18C12.1 protein.
          Length = 4171

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +2

Query: 257 INDILKMNICNLCSLHTSPTVLDQFL*FHSVK*DFSNR*KCF*DTHRPALGMITGRDDSI 436
           I  + KM + N+ +     + LD+F+     K  ++ + +CF D  R  +G+I  ++++I
Sbjct: 459 IRSLSKMMLNNISNYSAFASKLDEFI----EKLQYAEK-ECFDDWCRETVGLIDNKNETI 513

Query: 437 SMPSM-RNSFGSQQNMSINTKYRTRKL 514
           ++ +  +  +    N  +N  Y  R L
Sbjct: 514 NLETTGKIMYLEASNRELNVNYSDRLL 540


>Z48716-4|CAA88600.1|  105|Caenorhabditis elegans Hypothetical
           protein F59B10.6 protein.
          Length = 105

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +3

Query: 282 FVIFAHYILPRLFWISFCSFIVLSEILAIDKNVFE 386
           +++   Y++  + WI +C +I   E+  ++K + E
Sbjct: 31  WIVLFFYVIVSMIWIMYCCYINKMELSLVEKKIEE 65


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = -3

Query: 599  VLNVLRKDHCKIYNIFNLIESVLQWHLYIIF*CGILCLS-TCFVEI-------QNCFSWM 444
            V+  +RKD  ++  + NL++  L      IF C I C S  CF+         QNCF  M
Sbjct: 1314 VIESVRKDVKELRYLMNLMKKQLDGETEDIFDCPICCASIDCFMVFTCGHRICQNCFEKM 1373

Query: 443  ACL 435
              L
Sbjct: 1374 RAL 1376


>AC024842-5|AAF59621.1|  128|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.3 protein.
          Length = 128

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 302 VVSKDYKYSFLKYH*CSHNG 243
           V+  DY+ SFL  H C+HNG
Sbjct: 92  VLQTDYEISFLIKHNCTHNG 111


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 590 VLRKDHCKIYNIFNLIESVLQWHLYIIF*CGILCLSTCFVEIQNCFSW 447
           ++RK+H  I   FN++ +V+Q  L   +    +  S+  V  +    W
Sbjct: 37  IVRKNHVYIITFFNILSNVIQMALATFYLAPTIITSSFLVSTEKKSKW 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,863,692
Number of Sequences: 27780
Number of extensions: 337794
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)