Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1039
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37570.2 68415.m04608 expressed protein                             29   2.8  
At2g37570.1 68415.m04609 expressed protein                             29   2.8  
At4g19280.1 68417.m02842 hypothetical protein                          28   5.0  
At4g15350.1 68417.m02347 cytochrome P450 family protein contains...    28   6.6  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    27   8.7  

>At2g37570.2 68415.m04608 expressed protein
          Length = 351

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +2

Query: 377 CF*DTHRPALGMITGRDDSISMPSMRNSFGSQQNMSINTKYRTRKLCTNAIVKPTQSN*K 556
           C  +  R     +TGRD + ++P   + FGS +N+  NT +   +  T ++  PT ++ K
Sbjct: 78  CLDEEERKRWMELTGRDLNFTIPPEASDFGSWRNLP-NTDFELER-PTPSLKNPTANHSK 135

Query: 557 YYIFCNGL 580
             +  +GL
Sbjct: 136 KLLNGSGL 143


>At2g37570.1 68415.m04609 expressed protein
          Length = 494

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/68 (27%), Positives = 35/68 (51%)
 Frame = +2

Query: 377 CF*DTHRPALGMITGRDDSISMPSMRNSFGSQQNMSINTKYRTRKLCTNAIVKPTQSN*K 556
           C  +  R     +TGRD + ++P   + FGS +N+  NT +   +  T ++  PT ++ K
Sbjct: 221 CLDEEERKRWMELTGRDLNFTIPPEASDFGSWRNLP-NTDFELER-PTPSLKNPTANHSK 278

Query: 557 YYIFCNGL 580
             +  +GL
Sbjct: 279 KLLNGSGL 286


>At4g19280.1 68417.m02842 hypothetical protein 
          Length = 254

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 497 ILCLSTCFVEIQNCFSWMACLL 432
           I+CLSTCF   + CFS    LL
Sbjct: 45  IICLSTCFYFSKTCFSVFKLLL 66


>At4g15350.1 68417.m02347 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 509

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 75  SEYNIDFNRLKNYSSKVRVVGNDTSTTCYYYVIRQIFKY 191
           +EY I  N +K+    + + G DTS+T   +++ +I  +
Sbjct: 286 AEYKITRNHIKSMFVDLFIAGTDTSSTTIQWIMAEIINH 324


>At1g74170.1 68414.m08590 leucine-rich repeat family protein contains
            leucine rich-repeat (LRR) domains Pfam:PF00560,
            INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
            pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 574  WSFLRTFKTVFYGVFPPKKIDSEWEWNRGLFY 669
            WSF+  + T+  G+      DS   W+R  FY
Sbjct: 990  WSFVAAYVTILLGILASLSFDS--PWSRAWFY 1019


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,421
Number of Sequences: 28952
Number of extensions: 290644
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)