Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1037
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   0.93 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.0  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 322 HVKSALCYKTKRYH 363
           H ++A+C+K  RYH
Sbjct: 298 HKQTAICFKAPRYH 311


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +TLP  S+ + ++  + +C++F +
Sbjct: 262 ETLPQVSDAIPLLGTYFNCIMFMV 285


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +TLP  S+ + ++  + +C++F +
Sbjct: 262 ETLPQVSDAIPLLGTYFNCIMFMV 285


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +TLP  S+ + ++  + +C++F +
Sbjct: 262 ETLPQVSDAIPLLGTYFNCIMFMV 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,409
Number of Sequences: 336
Number of extensions: 2894
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)