Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1037
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6422| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7)               29   3.2  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.2  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.2  
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   28   7.4  

>SB_6422| Best HMM Match : Gemini_AC4_5 (HMM E-Value=6.7)
          Length = 442

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 542 VRFRGKSRVTPDYCLGH-YIQGVSKERSLR 628
           V FRG  R+  DY L H Y+  V K R +R
Sbjct: 122 VHFRGNERILFDYALSHKYVNDVCKLRIMR 151


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 455 GIVWFPSF-----VFFWYFLKRY*SNVYV*FELQVR 547
           G++W  +F     VF+   LKRY S VY  F L+ R
Sbjct: 167 GVIWVSAFAMRFPVFYGLTLKRYGSKVYCVFNLETR 202


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 455  GIVWFPSF-----VFFWYFLKRY*SNVYV*FELQVR 547
            G++W  +F     VF+   LKRY S VY  F L+ R
Sbjct: 910  GVIWVSAFAMRFPVFYGLTLKRYGSKVYCVFNLETR 945


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 385 SWTLFVVAYFFRWDHVMYVGLENW 456
           +W L+++A   R++HVM    +NW
Sbjct: 459 AWQLYLIASHPRYEHVMIGSYDNW 482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,150,654
Number of Sequences: 59808
Number of extensions: 364905
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)