Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1037
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +1

Query: 322 HVKSALCYKTKRYHYVASAY*SWTLFVVAYFFRWDHVMYVGLENWNCMVSVFCFFLVLS 498
           H ++ +CY        +S    WT+F+   F ++    +V L   N  + +   F ++S
Sbjct: 81  HFEAFICYSMMHVLQTSSLISGWTVFLTT-FMKYQAAKHVVLPKKNIWIVICVIFAIIS 138


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 385 INTHSLHNGSVLFYSTKQT*RGPL 314
           I T SLHN S +F +++ T  GPL
Sbjct: 294 IYTGSLHNNSTIFNTSQMTSEGPL 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,519,847
Number of Sequences: 27780
Number of extensions: 268023
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)