Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1037
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   7.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   7.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +TLP  S+ + ++  + +C++F +
Sbjct: 245 ETLPQVSDAIPLLGSYFNCIMFMV 268


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +TLP  S+ + ++  + +C++F +
Sbjct: 245 ETLPQVSDAIPLLGSYFNCIMFMV 268


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +TLP  S+ + ++  + +C++F +
Sbjct: 245 ETLPQVSDAIPLLGSYFNCIMFMV 268


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +TLP  S+ + ++  + +C++F +
Sbjct: 313 ETLPQVSDAIPLLGSYFNCIMFMV 336


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = +3

Query: 351 KTLPLCSECVLIMDPFRSCVLFQM 422
           +T+P  S+ V ++  + +C++F +
Sbjct: 282 ETMPATSDAVPLLGTYFNCIMFMV 305


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 363 MVAFCFIAQSRLDVAH*PVP 304
           ++ FC +A S +D A  P+P
Sbjct: 4   VIVFCLMALSIVDAAWKPLP 23


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 363 MVAFCFIAQSRLDVAH*PVP 304
           ++ FC +A S +D A  P+P
Sbjct: 4   VIVFCLMALSIVDAAWKPLP 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,366
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)