Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1036
         (414 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000051A42F Cluster: PREDICTED: similar to CG1213-PA,...    31   7.1  
UniRef50_Q628B7 Cluster: Putative uncharacterized protein CBG004...    31   9.3  

>UniRef50_UPI000051A42F Cluster: PREDICTED: similar to CG1213-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG1213-PA, isoform A - Apis mellifera
          Length = 526

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 249 MWFIENPFFIALMGERAHNAPDVKCFSGARGHHYVNAATQLET*GLS 109
           +WF E+P F+A+ G +   +  +  F G R  + V     L   GLS
Sbjct: 224 IWFPESPHFLAVRGRKTEASQSIAFFKGIRDPNEVKKELSLILRGLS 270


>UniRef50_Q628B7 Cluster: Putative uncharacterized protein CBG00449;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG00449 - Caenorhabditis
           briggsae
          Length = 1540

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 346 PVNLNTLKYKRKNVKRLTNI*DN*SI*IEKSCDVVHRK-SLFYCVN-GGTSSQRA 188
           P     +   R N K LTN+ DN +    K C+V+H K +L+ C   G T+ QRA
Sbjct: 440 PATFEWISNVRSNQK-LTNLRDNQTHIYRKRCNVMHLKHTLYICTTVGDTNVQRA 493


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,666,173
Number of Sequences: 1657284
Number of extensions: 6886768
Number of successful extensions: 13795
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13793
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)