BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1036 (414 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 29 0.22 SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 26 2.7 SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 25 3.5 SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster... 25 6.1 SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 24 8.1 >SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 490 Score = 29.5 bits (63), Expect = 0.22 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 299 PFDVLPLILKCVQVDGIRQCPSNCLLLIPDEEIYKEI 409 P+D L+ + Q GI P + +PDE+IYK + Sbjct: 305 PYDAQYLVEQYAQEIGITIVPFQMMTYLPDEDIYKPV 341 >SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit Prp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 542 Score = 25.8 bits (54), Expect = 2.7 Identities = 8/20 (40%), Positives = 16/20 (80%) Frame = -2 Query: 404 LYISLHQVLIEGNLKGTVLS 345 L + +H VL++GN++ T+L+ Sbjct: 102 LKVGIHPVLLDGNIQNTILT 121 >SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual Length = 459 Score = 25.4 bits (53), Expect = 3.5 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 3/21 (14%) Frame = -2 Query: 89 GCPTLFAGKRY---CVRQNEQ 36 G PTLF+ KRY +RQNEQ Sbjct: 235 GMPTLFSVKRYSDALLRQNEQ 255 >SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 2|||Manual Length = 560 Score = 24.6 bits (51), Expect = 6.1 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = +3 Query: 21 VGTTILLVLPDAVTLSGKKSRTAVRLYNRDLDLMSRAGW 137 V T++ PD V G+ S RL + +D + GW Sbjct: 421 VSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKYGW 459 >SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 533 Score = 24.2 bits (50), Expect = 8.1 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Frame = -1 Query: 315 GRTSKG*LTYKTINQFELRNRVMWFIENPFFIALMGERAH--NAPDVKCFSGARGHHYVN 142 G G L Y T +++ +P+ + L G + N P+++ F H +VN Sbjct: 69 GSMGIGHLRYPTAGSCAHSEAQPFYVNSPYGLVL-GHNGNLINGPELRRFLDTEAHRHVN 127 Query: 141 AATQLE 124 + E Sbjct: 128 TGSDSE 133 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,608,659 Number of Sequences: 5004 Number of extensions: 28471 Number of successful extensions: 67 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 67 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 144287194 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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