Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1036
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    29   0.22 
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   2.7  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   3.5  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   6.1  
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc...    24   8.1  

>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 299 PFDVLPLILKCVQVDGIRQCPSNCLLLIPDEEIYKEI 409
           P+D   L+ +  Q  GI   P   +  +PDE+IYK +
Sbjct: 305 PYDAQYLVEQYAQEIGITIVPFQMMTYLPDEDIYKPV 341


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 404 LYISLHQVLIEGNLKGTVLS 345
           L + +H VL++GN++ T+L+
Sbjct: 102 LKVGIHPVLLDGNIQNTILT 121


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -2

Query: 89  GCPTLFAGKRY---CVRQNEQ 36
           G PTLF+ KRY    +RQNEQ
Sbjct: 235 GMPTLFSVKRYSDALLRQNEQ 255


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 21  VGTTILLVLPDAVTLSGKKSRTAVRLYNRDLDLMSRAGW 137
           V  T++   PD V   G+ S    RL +  +D   + GW
Sbjct: 421 VSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKYGW 459


>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = -1

Query: 315 GRTSKG*LTYKTINQFELRNRVMWFIENPFFIALMGERAH--NAPDVKCFSGARGHHYVN 142
           G    G L Y T           +++ +P+ + L G   +  N P+++ F     H +VN
Sbjct: 69  GSMGIGHLRYPTAGSCAHSEAQPFYVNSPYGLVL-GHNGNLINGPELRRFLDTEAHRHVN 127

Query: 141 AATQLE 124
             +  E
Sbjct: 128 TGSDSE 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,659
Number of Sequences: 5004
Number of extensions: 28471
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)