Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1036
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1037 + 33990358-33991263                                         29   1.9  
11_08_0064 - 28127955-28128860                                         27   5.9  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    27   7.8  

>01_06_1037 + 33990358-33991263
          Length = 301

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 216 LMGERAHNAPDVKC-FSGARGHHYVNAATQLET*GLSLGCIV*RLSYSFC 70
           L+G +A   P V+C + GAR    V A     T    LGC+  RL Y  C
Sbjct: 206 LVGRQAALDPRVRCPYCGARVWSMVAAGMVPRTAWRRLGCLEGRLEYYVC 255


>11_08_0064 - 28127955-28128860
          Length = 301

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 94 LTAVLLFLPESVTASGKTSRMVV 26
          L AV++FLP   TA+GKT ++ V
Sbjct: 14 LVAVVVFLPCLATATGKTGQIAV 36


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 33  ILLVLPDAVTLSGKKSRTAVRLYNRDLDLMSR 128
           I+  LP+ + LS KK R AV    RD+ L  R
Sbjct: 274 IMRKLPNFLALSEKKIRRAVEFLKRDVGLEGR 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,821,226
Number of Sequences: 37544
Number of extensions: 198302
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)