Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1036
         (414 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    25   1.4  
AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse t...    24   1.9  
AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative odorant-b...    23   3.3  
AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative 5-oxoprol...    23   5.8  
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           22   7.7  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 3   SCKPARVGTTILLVLPDAVTLSGKKSRTAVRLYNRDLDLMSRAGWRH 143
           SC+     +  +L+ P+A   +      A  L N DL + +R  W++
Sbjct: 426 SCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKY 472


>AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 134

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 75  KSRTAVRLYNRDLDLMSRAGWRHSRSDVHEL 167
           +SR A+  +N ++   S+ G+R S S  H+L
Sbjct: 20  ESRMALHTFNNNIIPKSQFGFRPSLSTTHQL 50


>AJ697727-1|CAG26920.1|  285|Anopheles gambiae putative
           odorant-binding protein OBPjj17 protein.
          Length = 285

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 47  QNEQDGGTYPRGLTR 3
           Q +Q GG YPRG  R
Sbjct: 254 QYDQRGGNYPRGTER 268


>AJ439398-7|CAD28130.1| 1344|Anopheles gambiae putative
           5-oxoprolinase protein.
          Length = 1344

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 177 CFSGARGHHYVNAATQL 127
           CF GA G H  + A QL
Sbjct: 502 CFGGAGGQHACSIARQL 518


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 129 AGWRHSRSD 155
           AGWR SRSD
Sbjct: 194 AGWRQSRSD 202


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 417,327
Number of Sequences: 2352
Number of extensions: 7584
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 33777477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)