Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1036
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37650.1 68418.m04534 hypothetical protein contains Pfam PF04...    27   3.8  
At4g20850.1 68417.m03025 subtilase family protein contains simil...    27   6.6  

>At5g37650.1 68418.m04534 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 607

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 305 DVLPLILKCVQVDGIRQCPSNCLLLI 382
           ++ PL++ C+     R+C +NCL +I
Sbjct: 94  EIKPLLISCLTRQNPRKCDTNCLRVI 119


>At4g20850.1 68417.m03025 subtilase family protein contains similarity
            to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II)
            (Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo
            sapiens]
          Length = 1380

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 15   ARVGTTILLVLPDAVTLSGKKSRTAVRLYNRDLDLMSRAGWRH 143
            +R+GT  L VL D +    + +    +LY   LDL+   GW H
Sbjct: 1321 SRLGTA-LKVLDDLIQNENETANK--KLYELKLDLLEEIGWSH 1360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,534,495
Number of Sequences: 28952
Number of extensions: 152817
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)