Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1030
(514 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 308 2e-84
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 303 4e-83
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 303 4e-83
SB_56| Best HMM Match : Actin (HMM E-Value=0) 302 1e-82
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 301 3e-82
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 9e-47
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_54| Best HMM Match : Actin (HMM E-Value=0) 91 5e-19
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 74 6e-14
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 66 1e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 1e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 1e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 3e-06
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 43 2e-04
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.045
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.42
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.42
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 6.9
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 9.1
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 308 bits (756), Expect = 2e-84
Identities = 141/145 (97%), Positives = 144/145 (99%)
Frame = +1
Query: 79 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 258
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 259 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 438
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 439 TQIMFETFNTPAMYVAIQTVLSLYA 513
TQIMFETFN+PAMYVAIQ VLSLYA
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYA 145
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 303 bits (745), Expect = 4e-83
Identities = 140/145 (96%), Positives = 143/145 (98%)
Frame = +1
Query: 79 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 258
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 259 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 438
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 439 TQIMFETFNTPAMYVAIQTVLSLYA 513
TQIMFETFN+PAMYVAIQ VLSLYA
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYA 145
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 303 bits (745), Expect = 4e-83
Identities = 138/145 (95%), Positives = 143/145 (98%)
Frame = +1
Query: 79 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 258
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 259 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 438
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 439 TQIMFETFNTPAMYVAIQTVLSLYA 513
TQIMFETFN+PAMYVAIQ VLSLYA
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYA 145
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 302 bits (741), Expect = 1e-82
Identities = 139/143 (97%), Positives = 142/143 (99%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 264
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 265 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 444
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 445 IMFETFNTPAMYVAIQTVLSLYA 513
IMFETFN+PAMYVAIQ VLSLYA
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYA 144
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 301 bits (738), Expect = 3e-82
Identities = 138/143 (96%), Positives = 142/143 (99%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 264
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 265 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 444
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 445 IMFETFNTPAMYVAIQTVLSLYA 513
IMFETFN+PAMYVAIQ VLSLYA
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYA 144
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 9e-47
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 264
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 265 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 351
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +1
Query: 424 NREKMTQIMFETFNTPAMYVAIQTVLSLYA 513
N + M +IMFETFN+PAMYVAIQ VLSLYA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYA 107
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 142 bits (343), Expect = 2e-34
Identities = 67/142 (47%), Positives = 94/142 (66%), Gaps = 3/142 (2%)
Frame = +1
Query: 97 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 270
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 271 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 447
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 448 MFETFNTPAMYVAIQTVLSLYA 513
MFE + +Y+AIQ VL+LYA
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYA 148
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 91.1 bits (216), Expect = 5e-19
Identities = 40/61 (65%), Positives = 50/61 (81%)
Frame = +1
Query: 331 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQTVLSLY 510
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+Q V++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 511 A 513
A
Sbjct: 2189 A 2189
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 204
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 74.1 bits (174), Expect = 6e-14
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +1
Query: 379 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQTVLSLYA 513
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++Q VLSLYA
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYA 170
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 66.5 bits (155), Expect = 1e-11
Identities = 27/75 (36%), Positives = 48/75 (64%)
Frame = +1
Query: 289 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 468
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 469 PAMYVAIQTVLSLYA 513
PA ++ +VL+ +A
Sbjct: 63 PAFFLCKNSVLTAFA 77
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 204
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +1
Query: 73 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 243
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 244 GDEAQSKRGILTL 282
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +1
Query: 217 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 396
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +1
Query: 91 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 270
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 271 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 360
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1
Query: 445 IMFETFNTPAMYVAIQTVLSLYA 513
IMFE FN+PA+YVAIQ VLSLYA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYA 23
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.045
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -2
Query: 201 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 85
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.42
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 280 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 432
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.42
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.97
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -2
Query: 177 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 43
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 405 SPQPQGQQREDDPDHVRNIQHARHVRRHPNR 497
SP P+ R D+P V A HV HP+R
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 176 GNTARGASSPAKPALHIPEPLSTT 105
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -1
Query: 268 LFCSVPHLLHKSPSVPYR---PSRPDGGAFPRSRETLREEHHLLRSRPCTYRS 119
LF + P L SVP P+R + G P S LR + LLR + TY +
Sbjct: 213 LFSAQPESLGPVVSVPEANAVPARVETGGTPASSPNLRVDQILLRLKMLTYNT 265
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 253 PHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLLRR 83
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 237 RVLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAHTGAIVYY 106
R++ S T H + G H G H ++ EAGL I+ +
Sbjct: 37 RLVFSATIEHEYLGGRYHSIGAHISQETSRHEAGLTQISRIIRF 80
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 191 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 81
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 196 GAFPRSRETLREEHHLLRSRPCTYRS 119
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 97 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 201
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -3
Query: 269 PLLLCASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKP 138
P C S P F +P P W LP+ E N G SS A P
Sbjct: 2225 PRAECESDPVDSLFSEVP---PEWSTLPSPEQNAFGGDSSWASP 2265
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,453,257
Number of Sequences: 59808
Number of extensions: 448337
Number of successful extensions: 1479
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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