BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1028 (695 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 27 3.4 SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 4.5 SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 4.5 SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 26 5.9 SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 7.8 SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.8 SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 7.8 >SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster type|Schizosaccharomyces pombe|chr 1|||Manual Length = 529 Score = 26.6 bits (56), Expect = 3.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 606 CKSSFENTKSRQFNVRIMNSLRNGSLFVFQLRSP 505 C++ NTK+ +F+ I+ L S+ LRSP Sbjct: 298 CRNILTNTKANEFDGNILGMLSVYSMLYRMLRSP 331 >SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 581 Score = 26.2 bits (55), Expect = 4.5 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -3 Query: 585 TKSRQFNVRIMNSLRNGSLFVFQLRSPAG 499 T+ + +++ I S NGS F+ LR+P G Sbjct: 107 TQKQNYSINIPGSEFNGSNFITTLRAPRG 135 >SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1284 Score = 26.2 bits (55), Expect = 4.5 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -1 Query: 464 YLNREQIKSRLFMG-RHFFLGDSRIYLYDDEK 372 Y N+ +I + + RHF L +R+Y Y+D++ Sbjct: 700 YTNQNKISADVTASDRHFLLPSNRLYTYNDKQ 731 >SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 2244 Score = 25.8 bits (54), Expect = 5.9 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -3 Query: 567 NVRIMNSLRNGSLFVFQLRSPAGLHPPVKQRDT 469 +V+I + + L V ++R+ AG+ P VKQ DT Sbjct: 954 DVQIAAFMNSTELAVRRIRTEAGIRPFVKQIDT 986 >SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting complex subunit Apc4|Schizosaccharomyces pombe|chr 1|||Manual Length = 719 Score = 25.4 bits (53), Expect = 7.8 Identities = 12/45 (26%), Positives = 22/45 (48%) Frame = -1 Query: 509 LPPDSTLRLNNETHVYLNREQIKSRLFMGRHFFLGDSRIYLYDDE 375 +PP + NET +Y+ +S+L +F+G + L D + Sbjct: 448 IPPQEIIEHINETVIYIRHSLFRSKL---TSYFMGTKPLQLRDPD 489 >SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 25.4 bits (53), Expect = 7.8 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3 Query: 585 CSQTMICKLIVL*NSRIFVSSSLNDLFGNEVPYGTMR 695 CS T++ + + NS I SSSL+ FG G++R Sbjct: 514 CSDTLLNPIQLYPNSGILSSSSLSTSFGCPSVSGSLR 550 >SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosaccharomyces pombe|chr 1|||Manual Length = 841 Score = 25.4 bits (53), Expect = 7.8 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +3 Query: 486 PEGGVRRENVIERQTRSRFATNSL 557 PEGG+R N I+ RS +++SL Sbjct: 312 PEGGLRPANTIDGIVRSSLSSSSL 335 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,817,102 Number of Sequences: 5004 Number of extensions: 57050 Number of successful extensions: 120 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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