Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1028
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   3.4  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   4.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   4.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   5.9  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   7.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   7.8  

>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 606 CKSSFENTKSRQFNVRIMNSLRNGSLFVFQLRSP 505
           C++   NTK+ +F+  I+  L   S+    LRSP
Sbjct: 298 CRNILTNTKANEFDGNILGMLSVYSMLYRMLRSP 331


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 585 TKSRQFNVRIMNSLRNGSLFVFQLRSPAG 499
           T+ + +++ I  S  NGS F+  LR+P G
Sbjct: 107 TQKQNYSINIPGSEFNGSNFITTLRAPRG 135


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 464 YLNREQIKSRLFMG-RHFFLGDSRIYLYDDEK 372
           Y N+ +I + +    RHF L  +R+Y Y+D++
Sbjct: 700 YTNQNKISADVTASDRHFLLPSNRLYTYNDKQ 731


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 567  NVRIMNSLRNGSLFVFQLRSPAGLHPPVKQRDT 469
            +V+I   + +  L V ++R+ AG+ P VKQ DT
Sbjct: 954  DVQIAAFMNSTELAVRRIRTEAGIRPFVKQIDT 986


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 509 LPPDSTLRLNNETHVYLNREQIKSRLFMGRHFFLGDSRIYLYDDE 375
           +PP   +   NET +Y+     +S+L     +F+G   + L D +
Sbjct: 448 IPPQEIIEHINETVIYIRHSLFRSKL---TSYFMGTKPLQLRDPD 489


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 585 CSQTMICKLIVL*NSRIFVSSSLNDLFGNEVPYGTMR 695
           CS T++  + +  NS I  SSSL+  FG     G++R
Sbjct: 514 CSDTLLNPIQLYPNSGILSSSSLSTSFGCPSVSGSLR 550


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 486 PEGGVRRENVIERQTRSRFATNSL 557
           PEGG+R  N I+   RS  +++SL
Sbjct: 312 PEGGLRPANTIDGIVRSSLSSSSL 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,102
Number of Sequences: 5004
Number of extensions: 57050
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)