Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1028
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    31   1.2  

>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -3

Query: 627 NFTKQLICKS---SFENTKSRQFNVRIMNSLRN-GSLFVFQLRSPAGLHP 490
           N    +ICK+   S+  T++  FN  +  +L+  GSL V  LR PAG+ P
Sbjct: 592 NLRSLIICKADVASWSWTRTSNFNYALEETLKELGSLRVLVLRHPAGVLP 641


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,923
Number of Sequences: 37544
Number of extensions: 322861
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)