Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1028
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_38411| Best HMM Match : PHR (HMM E-Value=1.8e-28)                   29   4.8  
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)           28   8.3  

>SB_16014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 681 KELRSQKDRSAMTKRKFSNFTKQLICKSSFENTKSR-QFNVRIMNSLRNGS 532
           +EL  QKDR    K+K  N    L  + S  NT+ R + N+   N + +G+
Sbjct: 57  RELERQKDRKRKRKKKIDNLPILLFTRFSCRNTQVREEKNLTSQNCVESGN 107


>SB_38411| Best HMM Match : PHR (HMM E-Value=1.8e-28)
          Length = 436

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 678 ELRSQKDRSAMTKRKFSNFTKQLICKSSFENTKSRQFNV 562
           EL+ Q    A TK  +S+FT  L+C   F+ + + + N+
Sbjct: 343 ELKEQDRILAQTKATYSSFTHDLVCDILFDESIAIEKNI 381


>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 534 SRFATNSLFLH*TDATLCSQTMICKLIVL*NSRIFVSSSLNDLFGNEVPY 683
           ++  T++LFL    +T C  T IC ++VL    +++S ++ ++    VP+
Sbjct: 170 TKIRTSNLFLEGQGSTGCQATAICIIVVL----LYISRAVYNIVAVTVPH 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,496,988
Number of Sequences: 59808
Number of extensions: 397312
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)