Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1028
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 183 FCLSVWLFRLISGTAGPILTGLSLID 106
           F L+ WL  LIS     I T ++L++
Sbjct: 161 FILAAWLIALISAIPFAIYTKVNLVE 186


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 239 LNAYEFNYGTYTKITFFTI 183
           LN Y+ ++ T T ITF+ I
Sbjct: 210 LNTYKGDFPTETDITFYII 228


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -1

Query: 236 NAYEFNYGTYTKITFFTIFV 177
           N Y++NY  Y K  ++  ++
Sbjct: 327 NNYKYNYNNYNKKLYYKNYI 346


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 338 SLRFCDKIVGTKLIYTYK*NWSV 270
           S  FC K +G K I+T   N +V
Sbjct: 148 SSEFCGKNIGMKRIFTSSQNIAV 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,240
Number of Sequences: 438
Number of extensions: 3775
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)