BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1028 (695 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 23 2.8 DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 22 4.8 AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 6.4 AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 21 8.5 >DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR protein. Length = 381 Score = 23.0 bits (47), Expect = 2.8 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -3 Query: 183 FCLSVWLFRLISGTAGPILTGLSLID 106 F L+ WL LIS I T ++L++ Sbjct: 161 FILAAWLIALISAIPFAIYTKVNLVE 186 >DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine receptor beta1subunit protein. Length = 520 Score = 22.2 bits (45), Expect = 4.8 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -1 Query: 239 LNAYEFNYGTYTKITFFTI 183 LN Y+ ++ T T ITF+ I Sbjct: 210 LNTYKGDFPTETDITFYII 228 >AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex determiner protein. Length = 413 Score = 21.8 bits (44), Expect = 6.4 Identities = 6/20 (30%), Positives = 12/20 (60%) Frame = -1 Query: 236 NAYEFNYGTYTKITFFTIFV 177 N Y++NY Y K ++ ++ Sbjct: 327 NNYKYNYNNYNKKLYYKNYI 346 >AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin releasing hormone-binding protein protein. Length = 332 Score = 21.4 bits (43), Expect = 8.5 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -1 Query: 338 SLRFCDKIVGTKLIYTYK*NWSV 270 S FC K +G K I+T N +V Sbjct: 148 SSEFCGKNIGMKRIFTSSQNIAV 170 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 190,240 Number of Sequences: 438 Number of extensions: 3775 Number of successful extensions: 9 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 56 effective length of database: 121,815 effective search space used: 21317625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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