Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1028
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ...    30   1.7  

>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM), PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 540

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 657 RSAMTKRKFSNFTKQLICKSSFENTKSRQFNVRIMNSLRNGSLFVFQLRSPAGLHPP 487
           R  +  R F N T+ ++ +S FE       + R+MN         FQL SP  +H P
Sbjct: 361 RDVLGGRGFYNNTQDVLWRSKFEEEILELQSRRLMNLQLLDVKKHFQLNSPTNIHSP 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,639
Number of Sequences: 28952
Number of extensions: 281830
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)