Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1025
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.85 
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    28   1.5  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    27   2.6  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   2.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   3.4  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    27   3.4  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   7.9  

>SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 178

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +3

Query: 234 AKNEAYTPSGGAKKIVTNKLEWNAK---SKVGSLQNASYKPGGGDKKIETVKL 383
           AK E+  PS G KK  T KLE  AK   SK  +  NA   P      I  + L
Sbjct: 70  AKKESEKPSDGEKKGKTEKLEKEAKSVYSKACNFVNAHKVPASAAISINLLSL 122


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
 Frame = +3

Query: 297 WNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPP 476
           WNA+ K  + Q  S+        +   +         K+    N   +     ++  LP 
Sbjct: 22  WNAELKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDLRKQLPD 81

Query: 477 ASQLPKSDENLNEEQS*ITTRKTSH-FHLYFSHKMY 581
             +  K   N N+    + T+K  + FH   SH+ Y
Sbjct: 82  RPKFKKRIPN-NDSWVVVFTKKNRYFFHNLKSHESY 116


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 6   HRARVQQPKLQ*IPTPTEKKKVPMNKVQVGNAPSP 110
           H+ + QQP +  IP+  E KK  +N +++ + P+P
Sbjct: 51  HKPQEQQPNI--IPSKEEDKKPVINSMKLPSIPAP 83


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 262 EELKRLSLINWSGTQNRKSVHSRTLLTSPAAVIR 363
           E L  ++++N+S T   K+V   TL  + +AV+R
Sbjct: 264 ETLPVINIMNYSSTTGEKTVQVSTLAKAKSAVVR 297


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 389 RRKGKIESWLHS*HHPQARRWCNQESTSTSFTAAEIGRKLERR 517
           RRK ++E+     ++ + RRW N+E   T+    E  R+ E R
Sbjct: 400 RRKDQLEA---EEYYARERRWMNREKARTAALEREAAREEEER 439


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 102 PSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITP 224
           P   L A K K+G L +  Y+  G   KIE +  E   I P
Sbjct: 489 PEDVLSAYKDKVGDLASRGYRSLGVARKIEGQHWEIMGIMP 529


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 54  TEKKKVPMNKVQVGNAPSPNLKAVKSKIGSL 146
           T ++KV M  VQVG+  S + +A KSK GS+
Sbjct: 780 TTQEKVDM-WVQVGDVKSASEEAAKSKSGSV 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,930
Number of Sequences: 5004
Number of extensions: 63753
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)