BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1025 (698 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 29 0.85 SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 28 1.5 SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 27 2.6 SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 2.6 SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.4 SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 27 3.4 SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 7.9 >SPBC11C11.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 178 Score = 28.7 bits (61), Expect = 0.85 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%) Frame = +3 Query: 234 AKNEAYTPSGGAKKIVTNKLEWNAK---SKVGSLQNASYKPGGGDKKIETVKL 383 AK E+ PS G KK T KLE AK SK + NA P I + L Sbjct: 70 AKKESEKPSDGEKKGKTEKLEKEAKSVYSKACNFVNAHKVPASAAISINLLSL 122 >SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces pombe|chr 1|||Manual Length = 411 Score = 27.9 bits (59), Expect = 1.5 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%) Frame = +3 Query: 297 WNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPP 476 WNA+ K + Q S+ + + K+ N + ++ LP Sbjct: 22 WNAELKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENAEERKNSRDLRKQLPD 81 Query: 477 ASQLPKSDENLNEEQS*ITTRKTSH-FHLYFSHKMY 581 + K N N+ + T+K + FH SH+ Y Sbjct: 82 RPKFKKRIPN-NDSWVVVFTKKNRYFFHNLKSHESY 116 >SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe|chr 1|||Manual Length = 229 Score = 27.1 bits (57), Expect = 2.6 Identities = 12/35 (34%), Positives = 22/35 (62%) Frame = +3 Query: 6 HRARVQQPKLQ*IPTPTEKKKVPMNKVQVGNAPSP 110 H+ + QQP + IP+ E KK +N +++ + P+P Sbjct: 51 HKPQEQQPNI--IPSKEEDKKPVINSMKLPSIPAP 83 >SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 537 Score = 27.1 bits (57), Expect = 2.6 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +1 Query: 262 EELKRLSLINWSGTQNRKSVHSRTLLTSPAAVIR 363 E L ++++N+S T K+V TL + +AV+R Sbjct: 264 ETLPVINIMNYSSTTGEKTVQVSTLAKAKSAVVR 297 >SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 26.6 bits (56), Expect = 3.4 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 389 RRKGKIESWLHS*HHPQARRWCNQESTSTSFTAAEIGRKLERR 517 RRK ++E+ ++ + RRW N+E T+ E R+ E R Sbjct: 400 RRKDQLEA---EEYYARERRWMNREKARTAALEREAAREEEER 439 >SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 919 Score = 26.6 bits (56), Expect = 3.4 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +3 Query: 102 PSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITP 224 P L A K K+G L + Y+ G KIE + E I P Sbjct: 489 PEDVLSAYKDKVGDLASRGYRSLGVARKIEGQHWEIMGIMP 529 >SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces pombe|chr 1|||Manual Length = 835 Score = 25.4 bits (53), Expect = 7.9 Identities = 15/31 (48%), Positives = 21/31 (67%) Frame = +3 Query: 54 TEKKKVPMNKVQVGNAPSPNLKAVKSKIGSL 146 T ++KV M VQVG+ S + +A KSK GS+ Sbjct: 780 TTQEKVDM-WVQVGDVKSASEEAAKSKSGSV 809 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,972,930 Number of Sequences: 5004 Number of extensions: 63753 Number of successful extensions: 193 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 182 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 193 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 323158234 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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