Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1025
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 30 1.5
07_01_0539 - 3985623-3986653,3986752-3987046 30 2.0
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 2.7
01_05_0299 - 20595919-20595963,20596111-20596221,20596901-205969... 29 2.7
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 29 4.7
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 29 4.7
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 28 6.2
08_02_0351 - 16138147-16138187,16138328-16138480,16138684-161387... 28 6.2
08_02_0345 - 16057614-16057654,16057797-16057949,16058165-160582... 28 6.2
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 28 6.2
01_06_0673 + 31089846-31090132,31090258-31090453 28 6.2
10_01_0245 + 2566400-2567584 28 8.2
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648... 28 8.2
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +3
Query: 255 PSGGAKKIVTNKLEW---NAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTA 425
P G KK++ LEW AK+ + + QN S ++K++T K GE +S+ +TA
Sbjct: 1185 PEGTPKKLLPRALEWLIEFAKTSLANFQNDS------NQKLDTEKDFLGEPCESQSETTA 1238
Query: 426 NITHKPG 446
+ H G
Sbjct: 1239 GV-HSNG 1244
>07_01_0539 - 3985623-3986653,3986752-3987046
Length = 441
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3
Query: 306 KSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPP 476
+ KV + ++S G G +++ VK K KSK I K GGGA PLPP
Sbjct: 25 EKKVEEISSSSSSRGRGRRRMAPVKKSKKGKRKSKDSGKLKIV-KYGGGA--PPLPP 78
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +3
Query: 330 NASYKPG-----GGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPPASQ 485
N+ + PG G D + +DFG GS ANITH A SP+P + Q
Sbjct: 352 NSKHLPGTDTELGNDSVCQPGSIDFGLGPTENTGSGANITHAAVDAA--SPVPLSGQ 406
>01_05_0299 -
20595919-20595963,20596111-20596221,20596901-20596984,
20597350-20597450,20597584-20598301
Length = 352
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 2/121 (1%)
Frame = +3
Query: 96 NAPSPNLKAVKSKIGSLDNATYKP--GGGKVKIENRKLEFGNITPKIAAKNEAYTPSGGA 269
++PSP A+ + G N G GK+ K + N N GGA
Sbjct: 52 SSPSPAKNAIANINGVAGNLDGPGLIGSGKLAFGATKADRYNSVNLPVDNNNNNKSYGGA 111
Query: 270 KKIVTNKLEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGG 449
KI N + +K+G N+S G VK F K+ + S N + GG
Sbjct: 112 AKINNNNVNAFGFNKMGGYNNSSNGGGNYGGNGGDVKSYF-NKSVGRPASNNNNNNSNGG 170
Query: 450 G 452
G
Sbjct: 171 G 171
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 93 GNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFG 212
GN PSP+ + ++K + N Y G G + L G
Sbjct: 756 GNTPSPSTQCYENKFATSTNGNYSIGNGDTLSSSNSLHAG 795
>05_05_0322 +
24094831-24094992,24095147-24095216,24096184-24096307,
24096403-24096502,24096598-24096825,24096916-24097041,
24097092-24097376,24097490-24097648,24097751-24097929,
24098078-24098210
Length = 521
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 270 KKIVTNKLEWNAKSKVGSLQNASY-KPGGGDKKIETVKLDFGEKAKSKVG 416
+K + N+L+WN + + K GGDK++E + F E A + G
Sbjct: 386 EKNILNRLQWNITVPTPYVFLLRFIKAAGGDKELENMVFFFSEMALKEYG 435
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +3
Query: 75 MNKVQVGNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITPKIAAKNEAYT 254
+ K +G +P+PNL K K+ N + P +V + K FG + + A + Y
Sbjct: 168 VGKRGIGKSPAPNL---KEKV----NDSKDPSAPEVDLPGAK--FGEVCVRFAPEPSGYL 218
Query: 255 PSGGAKKIVTNK 290
G AK + NK
Sbjct: 219 HIGHAKAALLNK 230
>08_02_0351 -
16138147-16138187,16138328-16138480,16138684-16138778,
16139683-16139764,16142564-16142639,16143448-16143563,
16144260-16144349,16144438-16144453
Length = 222
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 8 SSKSATAKTPVNSYPDRKEKSTDE 79
SSKS T + P Y D K K+ D+
Sbjct: 160 SSKSTTGRVPAQQYSDYKSKTADQ 183
>08_02_0345 -
16057614-16057654,16057797-16057949,16058165-16058263,
16058395-16058413
Length = 103
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 8 SSKSATAKTPVNSYPDRKEKSTDE 79
SSKS T + P Y D K K+ D+
Sbjct: 41 SSKSTTGRVPAQQYSDYKSKTADQ 64
>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
Length = 283
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +3
Query: 384 DFGE-KAKSKVGSTANITHKPGGGAIKSPLPPASQLPKSDENLNEEQS*ITTRKTSHFHL 560
DF E A+ VGS + PGGG + PP S + + S + T HF
Sbjct: 13 DFEEASAQEAVGSASASYSPPGGGGVFGISPPESSPRDGRKRRKDRPSLVKHTFTPHFDG 72
Query: 561 YFSHKMY*QSN 593
+ K Y Q N
Sbjct: 73 HLWRK-YGQKN 82
>01_06_0673 + 31089846-31090132,31090258-31090453
Length = 160
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 291 LEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSK 410
+EWN + + +PGG KIE ++++ GE +K+K
Sbjct: 5 VEWNGREGARFTE----RPGGDALKIEDIRMEDGEPSKTK 40
>10_01_0245 + 2566400-2567584
Length = 394
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -1
Query: 104 RCIPNLNFIHRYFFLFGRGRNLLEFWLL-HSCSMI 3
RCI +F+ Y+ LFG N+LEF L+ HS S++
Sbjct: 223 RCIQIGDFL--YWMLFGYDNNILEFNLVNHSLSVV 255
>02_02_0586 -
11861509-11861637,11863651-11863815,11864738-11864846,
11864971-11865065,11865169-11865702,11866299-11866499,
11867826-11868090,11868111-11868736
Length = 707
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Frame = -2
Query: 454 APPPGLWVMLAVEPTFDFAFSPKSSLTVSIFLSPPPG---L*EAFWSEPTFDFAFHSSLL 284
+PP W + + PTF + K S+ I PPP L +P +L
Sbjct: 481 SPPDDYWRKMRLPPTFRPPRTYKPSMVDKIAFLPPPALALLATLLALDPAARGTAAQALQ 540
Query: 283 VTIFLAPPLGVYASFLAAI 227
+ F PPL + S L +
Sbjct: 541 SSFFSTPPLPCHLSELPVV 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,577,792
Number of Sequences: 37544
Number of extensions: 452289
Number of successful extensions: 1301
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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