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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1025
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    30   1.5  
07_01_0539 - 3985623-3986653,3986752-3987046                           30   2.0  
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742...    29   2.7  
01_05_0299 - 20595919-20595963,20596111-20596221,20596901-205969...    29   2.7  
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046...    29   4.7  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    29   4.7  
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681...    28   6.2  
08_02_0351 - 16138147-16138187,16138328-16138480,16138684-161387...    28   6.2  
08_02_0345 - 16057614-16057654,16057797-16057949,16058165-160582...    28   6.2  
01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485     28   6.2  
01_06_0673 + 31089846-31090132,31090258-31090453                       28   6.2  
10_01_0245 + 2566400-2567584                                           28   8.2  
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648...    28   8.2  

>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
            4066416-4066933,4067435-4067694,4068089-4068594,
            4068667-4071319
          Length = 2107

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = +3

Query: 255  PSGGAKKIVTNKLEW---NAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTA 425
            P G  KK++   LEW    AK+ + + QN S      ++K++T K   GE  +S+  +TA
Sbjct: 1185 PEGTPKKLLPRALEWLIEFAKTSLANFQNDS------NQKLDTEKDFLGEPCESQSETTA 1238

Query: 426  NITHKPG 446
             + H  G
Sbjct: 1239 GV-HSNG 1244


>07_01_0539 - 3985623-3986653,3986752-3987046
          Length = 441

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +3

Query: 306 KSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPP 476
           + KV  + ++S   G G +++  VK     K KSK      I  K GGGA   PLPP
Sbjct: 25  EKKVEEISSSSSSRGRGRRRMAPVKKSKKGKRKSKDSGKLKIV-KYGGGA--PPLPP 78


>01_06_1406 -
           37073548-37073822,37073892-37074111,37074200-37074246,
           37074404-37074576,37075161-37075238,37075751-37075813,
           37075889-37075961,37076150-37076189,37076302-37076368,
           37076719-37078472,37079128-37079230,37080041-37080078,
           37080221-37080347,37081944-37082152
          Length = 1088

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 330 NASYKPG-----GGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPPASQ 485
           N+ + PG     G D   +   +DFG       GS ANITH     A  SP+P + Q
Sbjct: 352 NSKHLPGTDTELGNDSVCQPGSIDFGLGPTENTGSGANITHAAVDAA--SPVPLSGQ 406


>01_05_0299 -
           20595919-20595963,20596111-20596221,20596901-20596984,
           20597350-20597450,20597584-20598301
          Length = 352

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 2/121 (1%)
 Frame = +3

Query: 96  NAPSPNLKAVKSKIGSLDNATYKP--GGGKVKIENRKLEFGNITPKIAAKNEAYTPSGGA 269
           ++PSP   A+ +  G   N       G GK+     K +  N        N      GGA
Sbjct: 52  SSPSPAKNAIANINGVAGNLDGPGLIGSGKLAFGATKADRYNSVNLPVDNNNNNKSYGGA 111

Query: 270 KKIVTNKLEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGG 449
            KI  N +     +K+G   N+S   G        VK  F  K+  +  S  N  +  GG
Sbjct: 112 AKINNNNVNAFGFNKMGGYNNSSNGGGNYGGNGGDVKSYF-NKSVGRPASNNNNNNSNGG 170

Query: 450 G 452
           G
Sbjct: 171 G 171


>06_03_0968 -
           26402154-26403834,26404322-26404383,26404473-26404682,
           26404776-26404860,26405461-26405618,26405745-26405868,
           26405955-26406123,26406202-26406287,26406379-26406467,
           26406564-26406735,26407820-26408193
          Length = 1069

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 93  GNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFG 212
           GN PSP+ +  ++K  +  N  Y  G G     +  L  G
Sbjct: 756 GNTPSPSTQCYENKFATSTNGNYSIGNGDTLSSSNSLHAG 795


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 270 KKIVTNKLEWNAKSKVGSLQNASY-KPGGGDKKIETVKLDFGEKAKSKVG 416
           +K + N+L+WN       +    + K  GGDK++E +   F E A  + G
Sbjct: 386 EKNILNRLQWNITVPTPYVFLLRFIKAAGGDKELENMVFFFSEMALKEYG 435


>10_06_0131 -
           11066033-11066251,11066548-11067012,11067102-11068177,
           11068269-11068422,11068511-11068601,11069016-11069152
          Length = 713

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +3

Query: 75  MNKVQVGNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITPKIAAKNEAYT 254
           + K  +G +P+PNL   K K+    N +  P   +V +   K  FG +  + A +   Y 
Sbjct: 168 VGKRGIGKSPAPNL---KEKV----NDSKDPSAPEVDLPGAK--FGEVCVRFAPEPSGYL 218

Query: 255 PSGGAKKIVTNK 290
             G AK  + NK
Sbjct: 219 HIGHAKAALLNK 230


>08_02_0351 -
           16138147-16138187,16138328-16138480,16138684-16138778,
           16139683-16139764,16142564-16142639,16143448-16143563,
           16144260-16144349,16144438-16144453
          Length = 222

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 8   SSKSATAKTPVNSYPDRKEKSTDE 79
           SSKS T + P   Y D K K+ D+
Sbjct: 160 SSKSTTGRVPAQQYSDYKSKTADQ 183


>08_02_0345 -
           16057614-16057654,16057797-16057949,16058165-16058263,
           16058395-16058413
          Length = 103

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 8   SSKSATAKTPVNSYPDRKEKSTDE 79
           SSKS T + P   Y D K K+ D+
Sbjct: 41  SSKSTTGRVPAQQYSDYKSKTADQ 64


>01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485
          Length = 283

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +3

Query: 384 DFGE-KAKSKVGSTANITHKPGGGAIKSPLPPASQLPKSDENLNEEQS*ITTRKTSHFHL 560
           DF E  A+  VGS +     PGGG +    PP S      +   +  S +    T HF  
Sbjct: 13  DFEEASAQEAVGSASASYSPPGGGGVFGISPPESSPRDGRKRRKDRPSLVKHTFTPHFDG 72

Query: 561 YFSHKMY*QSN 593
           +   K Y Q N
Sbjct: 73  HLWRK-YGQKN 82


>01_06_0673 + 31089846-31090132,31090258-31090453
          Length = 160

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 291 LEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSK 410
           +EWN +      +    +PGG   KIE ++++ GE +K+K
Sbjct: 5   VEWNGREGARFTE----RPGGDALKIEDIRMEDGEPSKTK 40


>10_01_0245 + 2566400-2567584
          Length = 394

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 104 RCIPNLNFIHRYFFLFGRGRNLLEFWLL-HSCSMI 3
           RCI   +F+  Y+ LFG   N+LEF L+ HS S++
Sbjct: 223 RCIQIGDFL--YWMLFGYDNNILEFNLVNHSLSVV 255


>02_02_0586 -
           11861509-11861637,11863651-11863815,11864738-11864846,
           11864971-11865065,11865169-11865702,11866299-11866499,
           11867826-11868090,11868111-11868736
          Length = 707

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
 Frame = -2

Query: 454 APPPGLWVMLAVEPTFDFAFSPKSSLTVSIFLSPPPG---L*EAFWSEPTFDFAFHSSLL 284
           +PP   W  + + PTF    + K S+   I   PPP    L      +P        +L 
Sbjct: 481 SPPDDYWRKMRLPPTFRPPRTYKPSMVDKIAFLPPPALALLATLLALDPAARGTAAQALQ 540

Query: 283 VTIFLAPPLGVYASFLAAI 227
            + F  PPL  + S L  +
Sbjct: 541 SSFFSTPPLPCHLSELPVV 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,577,792
Number of Sequences: 37544
Number of extensions: 452289
Number of successful extensions: 1301
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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