BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1025 (698 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 30 1.5 07_01_0539 - 3985623-3986653,3986752-3987046 30 2.0 01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 2.7 01_05_0299 - 20595919-20595963,20596111-20596221,20596901-205969... 29 2.7 06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 29 4.7 05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963... 29 4.7 10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 28 6.2 08_02_0351 - 16138147-16138187,16138328-16138480,16138684-161387... 28 6.2 08_02_0345 - 16057614-16057654,16057797-16057949,16058165-160582... 28 6.2 01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 28 6.2 01_06_0673 + 31089846-31090132,31090258-31090453 28 6.2 10_01_0245 + 2566400-2567584 28 8.2 02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648... 28 8.2 >08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086, 4066416-4066933,4067435-4067694,4068089-4068594, 4068667-4071319 Length = 2107 Score = 30.3 bits (65), Expect = 1.5 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Frame = +3 Query: 255 PSGGAKKIVTNKLEW---NAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTA 425 P G KK++ LEW AK+ + + QN S ++K++T K GE +S+ +TA Sbjct: 1185 PEGTPKKLLPRALEWLIEFAKTSLANFQNDS------NQKLDTEKDFLGEPCESQSETTA 1238 Query: 426 NITHKPG 446 + H G Sbjct: 1239 GV-HSNG 1244 >07_01_0539 - 3985623-3986653,3986752-3987046 Length = 441 Score = 29.9 bits (64), Expect = 2.0 Identities = 21/57 (36%), Positives = 28/57 (49%) Frame = +3 Query: 306 KSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPP 476 + KV + ++S G G +++ VK K KSK I K GGGA PLPP Sbjct: 25 EKKVEEISSSSSSRGRGRRRMAPVKKSKKGKRKSKDSGKLKIV-KYGGGA--PPLPP 78 >01_06_1406 - 37073548-37073822,37073892-37074111,37074200-37074246, 37074404-37074576,37075161-37075238,37075751-37075813, 37075889-37075961,37076150-37076189,37076302-37076368, 37076719-37078472,37079128-37079230,37080041-37080078, 37080221-37080347,37081944-37082152 Length = 1088 Score = 29.5 bits (63), Expect = 2.7 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%) Frame = +3 Query: 330 NASYKPG-----GGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPPASQ 485 N+ + PG G D + +DFG GS ANITH A SP+P + Q Sbjct: 352 NSKHLPGTDTELGNDSVCQPGSIDFGLGPTENTGSGANITHAAVDAA--SPVPLSGQ 406 >01_05_0299 - 20595919-20595963,20596111-20596221,20596901-20596984, 20597350-20597450,20597584-20598301 Length = 352 Score = 29.5 bits (63), Expect = 2.7 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 2/121 (1%) Frame = +3 Query: 96 NAPSPNLKAVKSKIGSLDNATYKP--GGGKVKIENRKLEFGNITPKIAAKNEAYTPSGGA 269 ++PSP A+ + G N G GK+ K + N N GGA Sbjct: 52 SSPSPAKNAIANINGVAGNLDGPGLIGSGKLAFGATKADRYNSVNLPVDNNNNNKSYGGA 111 Query: 270 KKIVTNKLEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGG 449 KI N + +K+G N+S G VK F K+ + S N + GG Sbjct: 112 AKINNNNVNAFGFNKMGGYNNSSNGGGNYGGNGGDVKSYF-NKSVGRPASNNNNNNSNGG 170 Query: 450 G 452 G Sbjct: 171 G 171 >06_03_0968 - 26402154-26403834,26404322-26404383,26404473-26404682, 26404776-26404860,26405461-26405618,26405745-26405868, 26405955-26406123,26406202-26406287,26406379-26406467, 26406564-26406735,26407820-26408193 Length = 1069 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +3 Query: 93 GNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFG 212 GN PSP+ + ++K + N Y G G + L G Sbjct: 756 GNTPSPSTQCYENKFATSTNGNYSIGNGDTLSSSNSLHAG 795 >05_05_0322 + 24094831-24094992,24095147-24095216,24096184-24096307, 24096403-24096502,24096598-24096825,24096916-24097041, 24097092-24097376,24097490-24097648,24097751-24097929, 24098078-24098210 Length = 521 Score = 28.7 bits (61), Expect = 4.7 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = +3 Query: 270 KKIVTNKLEWNAKSKVGSLQNASY-KPGGGDKKIETVKLDFGEKAKSKVG 416 +K + N+L+WN + + K GGDK++E + F E A + G Sbjct: 386 EKNILNRLQWNITVPTPYVFLLRFIKAAGGDKELENMVFFFSEMALKEYG 435 >10_06_0131 - 11066033-11066251,11066548-11067012,11067102-11068177, 11068269-11068422,11068511-11068601,11069016-11069152 Length = 713 Score = 28.3 bits (60), Expect = 6.2 Identities = 21/72 (29%), Positives = 33/72 (45%) Frame = +3 Query: 75 MNKVQVGNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITPKIAAKNEAYT 254 + K +G +P+PNL K K+ N + P +V + K FG + + A + Y Sbjct: 168 VGKRGIGKSPAPNL---KEKV----NDSKDPSAPEVDLPGAK--FGEVCVRFAPEPSGYL 218 Query: 255 PSGGAKKIVTNK 290 G AK + NK Sbjct: 219 HIGHAKAALLNK 230 >08_02_0351 - 16138147-16138187,16138328-16138480,16138684-16138778, 16139683-16139764,16142564-16142639,16143448-16143563, 16144260-16144349,16144438-16144453 Length = 222 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 8 SSKSATAKTPVNSYPDRKEKSTDE 79 SSKS T + P Y D K K+ D+ Sbjct: 160 SSKSTTGRVPAQQYSDYKSKTADQ 183 >08_02_0345 - 16057614-16057654,16057797-16057949,16058165-16058263, 16058395-16058413 Length = 103 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +2 Query: 8 SSKSATAKTPVNSYPDRKEKSTDE 79 SSKS T + P Y D K K+ D+ Sbjct: 41 SSKSTTGRVPAQQYSDYKSKTADQ 64 >01_06_1159 + 34990051-34990214,34995051-34995155,34995903-34996485 Length = 283 Score = 28.3 bits (60), Expect = 6.2 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Frame = +3 Query: 384 DFGE-KAKSKVGSTANITHKPGGGAIKSPLPPASQLPKSDENLNEEQS*ITTRKTSHFHL 560 DF E A+ VGS + PGGG + PP S + + S + T HF Sbjct: 13 DFEEASAQEAVGSASASYSPPGGGGVFGISPPESSPRDGRKRRKDRPSLVKHTFTPHFDG 72 Query: 561 YFSHKMY*QSN 593 + K Y Q N Sbjct: 73 HLWRK-YGQKN 82 >01_06_0673 + 31089846-31090132,31090258-31090453 Length = 160 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/40 (32%), Positives = 23/40 (57%) Frame = +3 Query: 291 LEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSK 410 +EWN + + +PGG KIE ++++ GE +K+K Sbjct: 5 VEWNGREGARFTE----RPGGDALKIEDIRMEDGEPSKTK 40 >10_01_0245 + 2566400-2567584 Length = 394 Score = 27.9 bits (59), Expect = 8.2 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Frame = -1 Query: 104 RCIPNLNFIHRYFFLFGRGRNLLEFWLL-HSCSMI 3 RCI +F+ Y+ LFG N+LEF L+ HS S++ Sbjct: 223 RCIQIGDFL--YWMLFGYDNNILEFNLVNHSLSVV 255 >02_02_0586 - 11861509-11861637,11863651-11863815,11864738-11864846, 11864971-11865065,11865169-11865702,11866299-11866499, 11867826-11868090,11868111-11868736 Length = 707 Score = 27.9 bits (59), Expect = 8.2 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Frame = -2 Query: 454 APPPGLWVMLAVEPTFDFAFSPKSSLTVSIFLSPPPG---L*EAFWSEPTFDFAFHSSLL 284 +PP W + + PTF + K S+ I PPP L +P +L Sbjct: 481 SPPDDYWRKMRLPPTFRPPRTYKPSMVDKIAFLPPPALALLATLLALDPAARGTAAQALQ 540 Query: 283 VTIFLAPPLGVYASFLAAI 227 + F PPL + S L + Sbjct: 541 SSFFSTPPLPCHLSELPVV 559 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,577,792 Number of Sequences: 37544 Number of extensions: 452289 Number of successful extensions: 1301 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1246 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1299 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1792053856 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -