Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1025
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45886| Best HMM Match : OEP (HMM E-Value=2) 37 0.018
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 31 0.90
SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26) 30 1.6
SB_58995| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 30 1.6
SB_34195| Best HMM Match : Init_tRNA_PT (HMM E-Value=2.7) 30 2.1
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 30 2.1
SB_57700| Best HMM Match : Parecho_VpG (HMM E-Value=7.7) 29 3.6
SB_47094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12) 28 6.3
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 28 6.3
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 28 6.3
SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_45886| Best HMM Match : OEP (HMM E-Value=2)
Length = 238
Score = 36.7 bits (81), Expect = 0.018
Identities = 34/118 (28%), Positives = 50/118 (42%)
Frame = +3
Query: 60 KKKVPMNKVQVGNAPSPNLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITPKIAAK 239
K K+ K ++ NA K +K L+NA YK K K+ N K + K+A
Sbjct: 56 KYKLAKAKYKLANA---KYKLANAKY-KLENAKYKLAKAKYKLANAKYKLAKAKYKLA-- 109
Query: 240 NEAYTPSGGAKKIVTNKLEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKV 413
+A A K+ T K ++ + L+NA YK K+ K KAK K+
Sbjct: 110 -KAKYKLANANKLQTRKCKYKLANAKYKLENAKYKLAKAKYKLAKEKYKLA-KAKYKL 165
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 366 IETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPLPPASQ 485
+ + L G+K K K G T N+T G+ + LP ASQ
Sbjct: 171 VNDIFLAIGKKGKKKKGKTLNLTEFLSDGSSQPALPTASQ 210
>SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 31.1 bits (67), Expect = 0.90
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 159 YKPGGGKVKIENRKLEFGNITPKIAAKNEAYTPSGGAKKIVTNKLEWNAKSKVGSLQNAS 338
YK K K+ N K + N K+A A + KI T K ++ + L+NA
Sbjct: 232 YKLANAKYKLANAKYKLANAKYKLAKYKLA---NANKSKIQTRKCKYKLANAKYKLENAK 288
Query: 339 YKPGGGDKKIETVK 380
YK K+ K
Sbjct: 289 YKLAKAKYKLANAK 302
>SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26)
Length = 288
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 276 IVTNKLEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANIT 434
+VT KL +A +++ + S GG KK +T+ + +G+KA + V S + I+
Sbjct: 197 VVTAKL--SASAELATAWYESNLLGGNLKKYQTLSIGYGKKANASVNSISRIS 247
>SB_58995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 276 IVTNKLEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANIT 434
+VT KL +A +++ + S GG KK +T+ + +G+KA + V S + I+
Sbjct: 25 VVTAKL--SASAELATAWYESNLLGGNLKKYQTLSIGYGKKANASVNSISRIS 75
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +1
Query: 286 INWSGTQNRKSVHSRTLLTSPAAVIRRSKQSS*ISAKRQNRKLAPQLTSPTSP 444
+N S +RK+ R+L TSP ++ S+++ ++ + K +P+ +S +SP
Sbjct: 110 LNASRKTSRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRSPKTSSKSSP 162
>SB_34195| Best HMM Match : Init_tRNA_PT (HMM E-Value=2.7)
Length = 597
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 307 NRKSVHSRTLLTSPAAVIRRSKQSS*ISAK-RQNRKLAPQLTSPTSPAVVQSRVHFHQ 477
++ ++ SRT + S + ++ SS + + R + +L+ T T+P+VVQSRV +
Sbjct: 336 SKDNLASRTTMPSENSFLQLPGSSSRLELRNRSSLELSQDTTGQTTPSVVQSRVSIRE 393
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/85 (27%), Positives = 36/85 (42%)
Frame = +3
Query: 180 VKIENRKLEFGNITPKIAAKNEAYTPSGGAKKIVTNKLEWNAKSKVGSLQNASYKPGGGD 359
V+IE +K + K A + S T K + + + G+L Y+P D
Sbjct: 2447 VRIETQKKQAHTYGSKKKADGKLRVQSQKGLSKKTEKSKEKSAHQNGTLHGEEYRPDISD 2506
Query: 360 KKIETVKLDFGEKAKSKVGSTANIT 434
IETV+L+ + + S NIT
Sbjct: 2507 NTIETVRLETALNNHTPI-SEGNIT 2530
>SB_57700| Best HMM Match : Parecho_VpG (HMM E-Value=7.7)
Length = 214
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 511 FKFSSDFGSCEAGGSGLLIAPPPGLWVMLAVEPTFDFAFSPKSSLTVSIFLSPP 350
F SD G+GL + P G + + +P + F +P S V++ S P
Sbjct: 88 FDIKSDGNQLTVTGNGLPVGAPTGTFPIARSDPAYAFDTNPNSIAKVAMEFSIP 141
>SB_47094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 307 NRKSVHSRTLLTSPAAVIRRSKQSS*ISAKRQNRKLAPQLTSPTSPA--VVQSRVHFHQL 480
+R+S H + + A IR+ + + + A + NR AP+ T A +Q+ + L
Sbjct: 231 SRQSTHGEVIRNNKAQSIRQGVKRNHVEASKNNRPPAPERTKKKQEARMTIQTETISNTL 290
Query: 481 HSC 489
+C
Sbjct: 291 TTC 293
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 28.3 bits (60), Expect = 6.3
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +3
Query: 120 AVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITPKIAAKNE--AYTPSGGAKKIVTNKL 293
++K+ S +AT P G I + G+ K ++ + TP+GG I T +
Sbjct: 178 SLKTTPRSGSSATTTPRSGSSAITTARS--GSSVTKTPRRDSCASTTPNGGYLAITTARS 235
Query: 294 EWNAKSKVGSLQNASYKPGGGDKKIETVKLDFGEKAKSKVGSTANITHKPGGGAIKSPL 470
+A + S +A PG G + T + + S+A T K G + +P+
Sbjct: 236 GSSATTTPRSDSSAMTTPGSGSSAMATPRSGSSATTTPRSDSSAITTTKSGSSSQITPI 294
>SB_27017| Best HMM Match : WD40 (HMM E-Value=5.8e-12)
Length = 490
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 475 GGSGLLIAPPPGLWVMLAVEP 413
GG GL + PPP +W+ P
Sbjct: 215 GGGGLYLRPPPWVWIFSGTTP 235
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 111 NLKAVKSKIGSLDNATYKPGGGKVKIENRKLEFGNITPKIAAKNEAYTPS-GGAKKIVTN 287
N++ + +I D A Y+ GG+ K R ++ N+ P I K + Y P+ G + +
Sbjct: 35 NMEEFELQITPTDGA-YR--GGQFKFSVRTTDYPNVAPSINCKTKIYHPNMDGYDGVCMS 91
Query: 288 KL-EWNAKSKVGSL 326
L +W A + + L
Sbjct: 92 LLDDWQASNDLEDL 105
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/93 (22%), Positives = 38/93 (40%)
Frame = +3
Query: 213 NITPKIAAKNEAYTPSGGAKKIVTNKLEWNAKSKVGSLQNASYKPGGGDKKIETVKLDFG 392
++ PKI A+ + + G+ ++ + E + +L+ Y + + + K
Sbjct: 592 SVGPKIIAEARSSNAAPGSGELEKLRKEIEKLKEEYALKTEEYNTTISELRRDLEKASTK 651
Query: 393 EKAKSKVGSTANITHKPGGGAIKSPLPPASQLP 491
E A + G PGG A +P PP LP
Sbjct: 652 EAATPEAGPPPPPPPPPGGQAGGAPPPPPPPLP 684
>SB_3888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 986
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = +3
Query: 42 IPTPTEKKKVPMNKVQVGNAPSPNLK--AVKSKIGSLD-NATYKPGGGKVKIENRKLEFG 212
+PT KK P + + P P K V+ I ++D +A P K K+E E G
Sbjct: 787 VPTAAAKKAAPASPAKAKPTPKPKAKLTVVQGDIAAIDADAVVLPTNAKFKLEG---EVG 843
Query: 213 NITPKIAAK 239
K K
Sbjct: 844 EALKKAGGK 852
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,797,488
Number of Sequences: 59808
Number of extensions: 475893
Number of successful extensions: 1303
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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