Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1024
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399...    28   5.4  
08_02_0093 + 12269953-12270507                                         27   7.2  
07_03_1406 + 26343915-26346032                                         27   9.5  

>02_05_0378 -
           28438918-28439064,28439280-28439313,28439859-28439963,
           28440402-28441558
          Length = 480

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 131 VGARVVYDVGDGGSVTTTPRQSLVC*SAGCAASRRGWLWLRR 6
           V A +   VGD        R+SL+   +   A RRG  WLRR
Sbjct: 436 VVAEIGERVGDPRGTGLQERRSLMAVGSWIGAKRRGGYWLRR 477


>08_02_0093 + 12269953-12270507
          Length = 184

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 306 SNRHYMCKCISKIRQRYIN*SRLLSQVCGVNVS 404
           +NR     C SK RQ  I  +  LS +CGVNV+
Sbjct: 12  ANRKARDVCFSKRRQVVIKKANELSILCGVNVA 44


>07_03_1406 + 26343915-26346032
          Length = 705

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   RPSEPKPTSPARGAPCRSTNEALARRGRH 89
           RP  P   SPA  + C     A ARRG H
Sbjct: 19  RPRLPPLASPATTSTCAPAPAATARRGSH 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,891,689
Number of Sequences: 37544
Number of extensions: 225545
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)