BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1024 (537 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) 30 1.0 SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_7996| Best HMM Match : efhand (HMM E-Value=1.4) 27 7.3 SB_12071| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 >SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) Length = 602 Score = 30.3 bits (65), Expect = 1.0 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +1 Query: 274 LLSKALGVDFILIVIICVNVSPKYGSDTLINLGYCLRS 387 LL+ +LG D + ++I C++ S SDTL L Y R+ Sbjct: 127 LLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRA 164 >SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1442 Score = 28.7 bits (61), Expect = 3.2 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = +3 Query: 273 VTV*GFRCRFYSNRHYMCKCISKIRQRYIN*SRLLSQVCGVNVSPKNTGDTRIVINY 443 +T+ +CRF S+ C+S+ ++ I ++ VC PKN D + NY Sbjct: 1018 ITMLNCQCRFCSD------CVSQYVKQIIQEQNIMHLVCPACSEPKNLEDDTVATNY 1068 >SB_7996| Best HMM Match : efhand (HMM E-Value=1.4) Length = 570 Score = 27.5 bits (58), Expect = 7.3 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +1 Query: 307 LIVIICVNVSPKYG----SDTLINLGYCLRSVVSTFLQRTPAIRESL 435 L V ICV + KYG D L N G+C +T ++ A+ + + Sbjct: 390 LQVSICVTLDHKYGLRDLIDLLSNFGFCASYFEATLYKKNAAVTQGV 436 >SB_12071| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 98 Score = 27.1 bits (57), Expect = 9.7 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +3 Query: 12 EPKPTSPARGAPCRSTNEALARRGRHGTTVAYIVDDSGS 128 E + P +GA CRS+ L RRG+ +V + D+ S Sbjct: 25 ERRREEPVQGAFCRSSRFTLKRRGKEKGSVRGRLRDNAS 63 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,091,216 Number of Sequences: 59808 Number of extensions: 273352 Number of successful extensions: 1037 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1001 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1037 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1215643300 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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