Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1024
         (537 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 6   PSEPKPTSPARGAPCRSTNEALARRGRHGTTVAYIVDDSGSDHKF 140
           PS+P P +PA  A   +      RR  +  T+  ++DDS S   F
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAPRRDPNNVTI--VLDDSLSPEDF 398


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 6   PSEPKPTSPARGAPCRSTNEALARRGRHGTTVAYIVDDSGSDHKF 140
           PS+P P +PA  A   +      RR  +  T+  ++DDS S   F
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAPRRDPNNVTI--VLDDSLSPEDF 398


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 6   PSEPKPTSPARGAPCRSTNEALARRGRHGTTVAYIVDDSGSDHKF 140
           PS+P P +PA  A   +      RR  +  T+  ++DDS S   F
Sbjct: 356 PSKPAPAAPASAATSPAPAPEAPRRDPNNVTI--VLDDSLSPEDF 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,085,514
Number of Sequences: 27780
Number of extensions: 201089
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)