Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   7.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   7.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   7.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   9.4  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 242 FQTRKISV*FEFGQYFSSRQR 304
           FQT ++   F F  Y + R+R
Sbjct: 16  FQTLELEKEFHFNHYLTRRRR 36


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 242 FQTRKISV*FEFGQYFSSRQR 304
           FQT ++   F F  Y + R+R
Sbjct: 167 FQTLELEKEFHFNHYLTRRRR 187


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 242 FQTRKISV*FEFGQYFSSRQR 304
           FQT ++   F F  Y + R+R
Sbjct: 226 FQTLELEKEFHFNHYLTRRRR 246


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 412 STRNVPSASADNLKAYF 362
           S RNVP     N +AYF
Sbjct: 741 SNRNVPQKCIFNGQAYF 757


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 87  ITKCPSGIFNNTSQLDTL 34
           I  CPSG      ++DT+
Sbjct: 400 ICDCPSGTNGTNCEIDTI 417


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,615
Number of Sequences: 336
Number of extensions: 2551
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)