Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    29   0.25 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    29   0.44 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   1.8  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   2.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   4.1  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   5.4  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    24   9.5  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    24   9.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    24   9.5  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   9.5  
SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    24   9.5  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
 Frame = +3

Query: 159 FVIIG-ISAVDKNKFKTCSQSGFCKR---LRPFKPEKSQYS--LNLDSILVHGNVLSAEV 320
           F I G      +++FKT  Q GF +R   L  F+ E   ++    L+SI  +  V+S   
Sbjct: 17  FAIFGSCQGAFRHQFKTAEQDGFARRNRDLAKFQKENLNWNGLFQLNSISYNSGVVSG-- 74

Query: 321 VTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPL 434
              +   E       + F +S L +   R ++DE   L
Sbjct: 75  -VFEQQSENGENQHLFPFSISFLKNDVVRFQMDEKSRL 111


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 354  VLWKYAFKLSALADGTFRVELDEADPLYP 440
            + W YA KL  L D + R E++E DP  P
Sbjct: 937  LFWDYAKKLDFLIDVSDRFEVEERDPPSP 965


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 421 SSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTS 314
           SSSS+R + ++S +     FH     S+ +S  TTS
Sbjct: 797 SSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTS 832


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 415 SSTRNVPSASADNLKAYFHKTVRFSSAASMV-TTSADRTL 299
           SS  ++ SAS DNL A    T   +S AS V T SA  T+
Sbjct: 167 SSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATI 206


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 141 RPRPSSWVFIAILCRHKPITKCPSGIFNNTSQLDTL*GIIF 19
           R    +++F++++C  + I   P G+F+    L      IF
Sbjct: 415 RANYDNYIFLSLICETRAIIVSPEGVFSANHDLSCEESTIF 455


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 177 SAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAE 317
           S  D  KF+T + SG    + P K     ++   D+IL    V S +
Sbjct: 42  SLKDLKKFETLNVSGKVPHVLPLKSHADPFAHIADAILAEEEVASTQ 88


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 177 KCR*SQMPRPGLRPRPSSW 121
           +C+ S +  P L+P P+SW
Sbjct: 97  RCKESNVEMPKLKPVPTSW 115


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +3

Query: 285 ILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRV 410
           + +H  + + +   ID A EK   +W   F    +    FRV
Sbjct: 246 VAIHAMLTACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRV 287


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 243 FKPEKSQYSLNLDSILVHGNVLSA 314
           F PE S    N+   L+ G+VLSA
Sbjct: 547 FNPEDSDLEKNITEALLTGDVLSA 570


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -1

Query: 394  SASADNLKAYFHKTVRFSSAASMVTTSADRTLP*TKILSKFKLY*DFSGLKGRSLLQKPD 215
            SAS+  L++YF++   F++ AS   +S +  +P   + +K++ +  F  L      + PD
Sbjct: 980  SASSSPLRSYFNEEDSFNN-ASAAHSSKESDIPSGGVFTKYRNH--FGNLMTSEETKAPD 1036


>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 309 SAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELD 419
           S E++ I   DE+  VLW    +++ +    FR E D
Sbjct: 153 SQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETD 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,997
Number of Sequences: 5004
Number of extensions: 39013
Number of successful extensions: 88
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)