Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    37   0.009
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    32   0.19 
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990...    28   4.0  
06_03_0037 + 15773444-15773647,15773862-15774367,15775011-157752...    27   5.3  
05_04_0069 - 17639386-17641380                                         27   5.3  
05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419...    27   7.1  
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771...    27   7.1  

>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/78 (29%), Positives = 40/78 (51%)
 Frame = +3

Query: 189 KNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKY 368
           K++F+ C+Q+ FCKR R   P      L+LD+     ++  A   ++ A+    + L   
Sbjct: 31  KDEFRNCNQTPFCKRARTRAPHSLDAPLSLDA----ASLAVATDGSLTASLSHPSRLRPL 86

Query: 369 AFKLSALADGTFRVELDE 422
             +LSAL     R+++DE
Sbjct: 87  LLRLSALPPHALRLQIDE 104


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 240 PFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTF 404
           P  P +  Y+LNL+SI+V+G  L  +      ++ + T++      L+ LADG +
Sbjct: 267 PLVPSQPHYNLNLESIVVNGQKLPIDSSLFTTSNTQGTIV-DSGTTLAYLADGAY 320


>04_03_0212 +
           12697854-12698549,12698655-12698930,12698991-12699038,
           12699659-12699715,12700965-12701163,12702267-12702373,
           12702586-12702759,12702844-12703083,12703638-12703693,
           12704499-12704622
          Length = 658

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 275 IQTILRFFWFERAEPFTKAGLTACFKFIFVYRRN 174
           IQTI   F  E A    KA   +CF   F  +RN
Sbjct: 323 IQTIFTHFMLENANHMRKAATRSCFYAGFAVQRN 356


>06_03_0037 +
           15773444-15773647,15773862-15774367,15775011-15775246,
           15775483-15775685,15775989-15776279,15776997-15777084,
           15777539-15777861
          Length = 616

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 316 RWLPLTLRMKSEQFCGNMPSSYQRWPMARSV 408
           RW+P   +   E +CG++P+    WP A  +
Sbjct: 303 RWVPAFFK---EDYCGSVPNVKTAWPFAEQL 330


>05_04_0069 - 17639386-17641380
          Length = 664

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 240 PFKPEKSQYSLNLDSILVHGNVLSAEV 320
           PF+P+   +   L S  VHGNV+ AEV
Sbjct: 456 PFEPDGCIWGSLLGSCRVHGNVVLAEV 482


>05_01_0502 +
           4191443-4191769,4191770-4191892,4194161-4194313,
           4194420-4194505,4194648-4194732,4194871-4194990,
           4195066-4195134,4195351-4195506
          Length = 372

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 243 FKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDE 422
           F P+   + L LD      N+  A++V I      ++V + Y       A G+F + L  
Sbjct: 77  FFPQFVNFLLLLDMFFFVSNLFMADLVGIHGLQVLKSVPFPYTITTFQFASGSFFITLMW 136

Query: 423 ADPLYPRYR 449
              L+P+ R
Sbjct: 137 LLNLHPKPR 145


>02_03_0077 +
           14874273-14874571,14875304-14876150,14876878-14877147,
           14877313-14878065
          Length = 722

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 132 VWALVLVAAFVIIGISAVDKNKF-KTCSQSGFCKRLR 239
           +W ++    F + G+S  +KN+F +  S +  CK+ R
Sbjct: 461 IWKVIGWQRFAVKGVSGFEKNRFWENISSAPICKKHR 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,279
Number of Sequences: 37544
Number of extensions: 254658
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)