Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              32   0.19 
SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              32   0.19 
SB_8074| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           28   3.1  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.5  
SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2)                27   5.5  

>SB_56644| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 858

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 255 KSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPL 434
           K QYS+N+ SI V G V  A V  +   +++ +   +   +L   A    R ELD  D  
Sbjct: 245 KRQYSVNITSIPVAGGVEMAVVPGVSCTEDRFSQACEEFIRLFQRAANFTRHELDAGDQR 304

Query: 435 YPRYR 449
             +YR
Sbjct: 305 LVQYR 309


>SB_30107| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 911

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 255 KSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPL 434
           K QYS+N+ SI V G V  A V  +   +++ +   +   +L   A    R ELD  D  
Sbjct: 285 KRQYSVNITSIPVAGGVEMAVVPGVSCTEDRFSQACEEFIRLFQRAANFTRHELDAGDQR 344

Query: 435 YPRYR 449
             +YR
Sbjct: 345 LVQYR 349


>SB_8074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 162 QMPRPGLRPRPSSWVFIAILCRHKPITKCPSG 67
           ++  PG +P P+S   + IL RHK I  C  G
Sbjct: 40  KLDNPGTQPNPASKSPVKILQRHKKIPLCSFG 71


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 430  GSASSSSTRNVPSASADNLKAYFHKTV 350
            GS  + S    PS+S+ NL+AYF K+V
Sbjct: 1676 GSPPTQSPTLSPSSSSSNLEAYFDKSV 1702


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 451 VLYLGYRGSASSSSTRNVPSASADNLKAYFH 359
           ++ L    S+SSSS+ ++ S+S+  L +Y+H
Sbjct: 234 IIILSSSSSSSSSSSSSLSSSSSSPLSSYYH 264


>SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2)
          Length = 178

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 254 FWFERAEPFTKAGLTACFKFI 192
           F+F++  PF K G + CF F+
Sbjct: 26  FYFQKLSPFAKDGHSHCFSFL 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,659
Number of Sequences: 59808
Number of extensions: 296794
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)