Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D42041-1|BAA07642.1|  943|Homo sapiens KIAA0088 protein.               64   3e-10
AJ000332-1|CAA04006.1|  944|Homo sapiens Glucosidase II protein.       64   3e-10
AF144074-1|AAF66685.1|  966|Homo sapiens glucosidase II alpha su...    64   3e-10
BC112051-1|AAI12052.1|  914|Homo sapiens glucosidase, alpha; neu...    39   0.007
AF545046-1|AAN74757.1|  914|Homo sapiens neutral alpha-glucosida...    39   0.007
AF545045-1|AAN74756.1|  914|Homo sapiens neutral alpha glucosida...    39   0.007
BC093833-1|AAH93833.1|  914|Homo sapiens glucosidase, alpha; neu...    39   0.009
BC059406-1|AAH59406.1|  914|Homo sapiens glucosidase, alpha; neu...    39   0.009
AK074037-1|BAB84863.1|  925|Homo sapiens FLJ00088 protein protein.     39   0.009

>D42041-1|BAA07642.1|  943|Homo sapiens KIAA0088 protein.
          Length = 943

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
 Frame = +3

Query: 123 KMKVWA-LVLVAAFVIIGIS-AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVH 296
           + + WA LVL    V +GI+ AVD++ FKTC +S FCKR R  +P  S Y   LDS+   
Sbjct: 10  RRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKRQRSIRPGLSPYRALLDSL--- 66

Query: 297 GNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPLYPRYR 449
              L  + +T+    E   VL     +L  L     R  +DE +P  PRYR
Sbjct: 67  --QLGPDSLTVHLIHEVTKVL--LVLELQGLQKNMTRFRIDELEPRRPRYR 113


>AJ000332-1|CAA04006.1|  944|Homo sapiens Glucosidase II protein.
          Length = 944

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
 Frame = +3

Query: 123 KMKVWA-LVLVAAFVIIGIS-AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVH 296
           + + WA LVL    V +GI+ AVD++ FKTC +S FCKR R  +P  S Y   LDS+   
Sbjct: 11  RRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKRQRSIRPGLSPYRALLDSL--- 67

Query: 297 GNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPLYPRYR 449
              L  + +T+    E   VL     +L  L     R  +DE +P  PRYR
Sbjct: 68  --QLGPDSLTVHLIHEVTKVL--LVLELQGLQKNMTRFRIDELEPRRPRYR 114


>AF144074-1|AAF66685.1|  966|Homo sapiens glucosidase II alpha
           subunit protein.
          Length = 966

 Score = 63.7 bits (148), Expect = 3e-10
 Identities = 42/111 (37%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
 Frame = +3

Query: 123 KMKVWA-LVLVAAFVIIGIS-AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVH 296
           + + WA LVL    V +GI+ AVD++ FKTC +S FCKR R  +P  S Y   LDS+   
Sbjct: 11  RRRSWASLVLAFLGVCLGITLAVDRSNFKTCEESSFCKRQRSIRPGLSPYRALLDSL--- 67

Query: 297 GNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEADPLYPRYR 449
              L  + +T+    E   VL     +L  L     R  +DE +P  PRYR
Sbjct: 68  --QLGPDSLTVHLIHEVTKVL--LVLELQGLQKNMTRFRIDELEPRRPRYR 114


>BC112051-1|AAI12052.1|  914|Homo sapiens glucosidase, alpha;
           neutral C protein.
          Length = 914

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +3

Query: 180 AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVL 359
           AVDKN F+ C++  F +R + +  +KS Y   LDS+    +    +++     +E   V 
Sbjct: 15  AVDKNIFRDCNKIAFYRRQKQWLSKKSTYQALLDSVTTDEDSTRFQII-----NEASKV- 68

Query: 360 WKYAFKLSALADGTFRVELDEADPLYPRY 446
                ++  +    FR++++E  PL PR+
Sbjct: 69  -PLLAEIYGIEGNIFRLKINEETPLKPRF 96


>AF545046-1|AAN74757.1|  914|Homo sapiens neutral alpha-glucosidase
           C type 3 protein.
          Length = 914

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +3

Query: 180 AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVL 359
           AVDKN F+ C++  F +R + +  +KS Y   LDS+    +    +++     +E   V 
Sbjct: 15  AVDKNIFRDCNKIAFYRRQKQWLSKKSTYQALLDSVTTDEDSTRFQII-----NEASKV- 68

Query: 360 WKYAFKLSALADGTFRVELDEADPLYPRY 446
                ++  +    FR++++E  PL PR+
Sbjct: 69  -PLLAEIYGIEGNIFRLKINEETPLKPRF 96


>AF545045-1|AAN74756.1|  914|Homo sapiens neutral alpha glucosidase
           C type 2 protein.
          Length = 914

 Score = 39.1 bits (87), Expect = 0.007
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +3

Query: 180 AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVL 359
           AVDKN F+ C++  F +R + +  +KS Y   LDS+    +    +++     +E   V 
Sbjct: 15  AVDKNIFRDCNKIAFYRRQKQWLSKKSTYQALLDSVTTDEDSTRFQII-----NEASKV- 68

Query: 360 WKYAFKLSALADGTFRVELDEADPLYPRY 446
                ++  +    FR++++E  PL PR+
Sbjct: 69  -PLLAEIYGIEGNIFRLKINEETPLKPRF 96


>BC093833-1|AAH93833.1|  914|Homo sapiens glucosidase, alpha;
           neutral C protein.
          Length = 914

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +3

Query: 180 AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVL 359
           AVDKN F+ C++  F +R + +  +KS Y   LDS+    +    +++     +E   V 
Sbjct: 15  AVDKNIFRDCNKIAFYRRQKQWLSKKSTYRALLDSVTTDEDSTRFQII-----NEASKV- 68

Query: 360 WKYAFKLSALADGTFRVELDEADPLYPRY 446
                ++  +    FR++++E  PL PR+
Sbjct: 69  -PLLAEIYGIEGNIFRLKINEETPLKPRF 96


>BC059406-1|AAH59406.1|  914|Homo sapiens glucosidase, alpha;
           neutral C protein.
          Length = 914

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +3

Query: 180 AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVL 359
           AVDKN F+ C++  F +R + +  +KS Y   LDS+    +    +++     +E   V 
Sbjct: 15  AVDKNIFRDCNKIAFYRRQKQWLSKKSTYRALLDSVTTDEDSTRFQII-----NEASKV- 68

Query: 360 WKYAFKLSALADGTFRVELDEADPLYPRY 446
                ++  +    FR++++E  PL PR+
Sbjct: 69  -PLLAEIYGIEGNIFRLKINEETPLKPRF 96


>AK074037-1|BAB84863.1|  925|Homo sapiens FLJ00088 protein protein.
          Length = 925

 Score = 38.7 bits (86), Expect = 0.009
 Identities = 24/89 (26%), Positives = 45/89 (50%)
 Frame = +3

Query: 180 AVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVL 359
           AVDKN F+ C++  F +R + +  +KS Y   LDS+    +    +++     +E   V 
Sbjct: 26  AVDKNIFRDCNKIAFYRRQKQWLSKKSTYRALLDSVTTDEDSTRFQII-----NEASKV- 79

Query: 360 WKYAFKLSALADGTFRVELDEADPLYPRY 446
                ++  +    FR++++E  PL PR+
Sbjct: 80  -PLLAEIYGIEGNIFRLKINEETPLKPRF 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,048,833
Number of Sequences: 237096
Number of extensions: 1408605
Number of successful extensions: 6557
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6548
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)