Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical ...    51   5e-07
Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical pr...    50   6e-07
Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical pr...    40   6e-04
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    29   2.1  
AL032646-4|CAA21678.1|  237|Caenorhabditis elegans Hypothetical ...    29   2.1  
U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical p...    27   4.8  
AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical ...    27   6.4  
AJ271466-1|CAB69047.1|  341|Caenorhabditis elegans fructose-1,6-...    27   6.4  
AC006670-1|AAF39910.1|  341|Caenorhabditis elegans Fructose-1,6-...    27   6.4  

>AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical
           protein F52D1.1 protein.
          Length = 903

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
 Frame = +3

Query: 147 LVAAFVIIG-ISAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVV 323
           LV A+++IG + AVD+  FKTC QSGFCKR R      + Y +  DS+  +   L A + 
Sbjct: 4   LVVAWLLIGALDAVDRQNFKTCEQSGFCKRHRAV-TSPTGYEVVGDSVKTNETGLHALI- 61

Query: 324 TIDAADEKRTVLWKYAFKLSALADGTFRVELDEAD-PLYPRYR 449
                  K T L      + AL D T RV +DE D  L  RY+
Sbjct: 62  -----KNKDTTL---RLSIVALKDSTVRVVIDENDGALRKRYQ 96


>Z70753-5|CAB54240.1|  910|Caenorhabditis elegans Hypothetical
           protein F40F9.6b protein.
          Length = 910

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 32/98 (32%), Positives = 49/98 (50%)
 Frame = +3

Query: 135 WALVLVAAFVIIGISAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSA 314
           W + ++     + +  V ++ FKTC QS FCK+ R    E + Y L  DSI  HG V +A
Sbjct: 7   WIVPIILLATPLAVQMVKRDDFKTCEQSAFCKQHRAI-TEPTGYELLADSITHHGAVWTA 65

Query: 315 EVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEAD 428
            V      + + T+       +  LAD T RV++DE +
Sbjct: 66  NV-----RNSQNTL----KINVIGLADSTVRVQIDEPE 94


>Z70753-4|CAA94764.1|  924|Caenorhabditis elegans Hypothetical
           protein F40F9.6a protein.
          Length = 924

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
 Frame = +3

Query: 135 WALVLVAAFVIIGISAVDKNKFKTCSQSGFCKRLRPFK-------------PEKSQYSLN 275
           W + ++     + +  V ++ FKTC QS FCK+ R                 E + Y L 
Sbjct: 7   WIVPIILLATPLAVQMVKRDDFKTCEQSAFCKQHRAITVRRGSQNHHNWSLQEPTGYELL 66

Query: 276 LDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELDEAD 428
            DSI  HG V +A V      + + T+       +  LAD T RV++DE +
Sbjct: 67  ADSITHHGAVWTANV-----RNSQNTL----KINVIGLADSTVRVQIDEPE 108


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/54 (33%), Positives = 33/54 (61%)
 Frame = -1

Query: 436 YRGSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRTLP*TKILSK 275
           +R +ASSSS+ +  SASA++   +    VR  SA+S + ++  R +P + I+ +
Sbjct: 221 HRPAASSSSSSSSSSASAEHHPTH---QVRVPSASSSIESNEQRVVPESVIVKE 271


>AL032646-4|CAA21678.1|  237|Caenorhabditis elegans Hypothetical
           protein Y54E2A.5 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 141 LVLVAAFVIIGISAVDKNKFKTCSQSGFCK-RLRPFK 248
           LVL   FV +  SA D +    C  + FC+   RPFK
Sbjct: 3   LVLAVIFVFLTFSAADVDGDVQCGNNKFCRVGFRPFK 39


>U97012-9|AAK39142.2|  995|Caenorhabditis elegans Hypothetical
           protein C04E6.11 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 361 HKTVRFSSAASMVTTSADRTLP*TKILSKFKLY*DFSGL---KGRSLLQKPD 215
           H+  RFSS  S ++ SA  T P  +I SK     DF G+   K ++    PD
Sbjct: 16  HRISRFSSKISQLSISAATTFPSIEIDSKLVRRGDFRGVVASKEKNRASNPD 67


>Z81109-12|CAE17917.2|  364|Caenorhabditis elegans Hypothetical
           protein R10D12.17 protein.
          Length = 364

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 66  YLKGILLSVYDDIR*Q*KPKMKVWALVLVAAFVIIGISAVDKNKFKTCSQSGF 224
           Y+  I+ S  D++      ++ +W  VL A   +I +  ++ N+F+  S  GF
Sbjct: 86  YISRIVFSTGDNMS-----RLSIWLCVLFALVRVIVLQKINDNRFQILSAPGF 133


>AL021497-8|CAA16409.1|  334|Caenorhabditis elegans Hypothetical
           protein Y51A2D.12 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = -3

Query: 347 LFIRSVNGNHLSG*NVAVN*NTVQIQTILRFFWFERAEPFTKAGLTACFKFIFVYRRNAD 168
           LF+ S+  ++    N+A+  ++  ++ +LR  W     PF    LT    F+ +Y     
Sbjct: 234 LFLTSLTVSNYYLTNLAIGSDSDFVKFLLR--WIPLLTPFASDALTLTHPFLLLYFSKTV 291

Query: 167 NHKCRDQD 144
             KC + +
Sbjct: 292 RRKCAESN 299


>AJ271466-1|CAB69047.1|  341|Caenorhabditis elegans
           fructose-1,6-bisphosphatase protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 252 EKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVEL 416
           E SQ+ +  DSI +   VL  +    DA+ E   +L      + A+A  T +  L
Sbjct: 4   ETSQFGIETDSITLQRYVLQEQRKHADASGELTALLTNMLVAIKAIASATQKAGL 58


>AC006670-1|AAF39910.1|  341|Caenorhabditis elegans
           Fructose-1,6-biphosphatase protein1 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 252 EKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVEL 416
           E SQ+ +  DSI +   VL  +    DA+ E   +L      + A+A  T +  L
Sbjct: 4   ETSQFGIETDSITLQRYVLQEQRKHADASGELTALLTNMLVAIKAIASATQKAGL 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,705,697
Number of Sequences: 27780
Number of extensions: 224433
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)