Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   4.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.3  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 198 FKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVH 296
           F+ C  SG+ K L+        +  NLD++  H
Sbjct: 75  FEFCQDSGYDKILQVLGATPRDFLQNLDALHDH 107


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 198 FKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVH 296
           F+ C  SG+ K L+        +  NLD++  H
Sbjct: 75  FEFCQDSGYDKILQVLGATPRDFLQNLDALHDH 107


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 189 KNKFKTCSQSGFCKRL 236
           +NKFKT      C+RL
Sbjct: 24  ENKFKTTRYLSVCERL 39


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 421 SSSSTRNVPSASADNLKAYFHKTVRFSSAASMVTTSADRTLP*TKILSK 275
           ++ +T  +P+ASA          V  +S A+   T+   T+P T+ L K
Sbjct: 221 TTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP-TRRLRK 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,605
Number of Sequences: 438
Number of extensions: 2874
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)