Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1023
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    34   0.039
At2g43240.1 68415.m05374 nucleotide-sugar transporter family pro...    29   1.5  
At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase iron-s...    29   1.9  
At3g02740.1 68416.m00266 aspartyl protease family protein contai...    28   2.6  
At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containi...    27   4.5  
At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containi...    27   5.9  

>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
           alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = +3

Query: 189 KNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKY 368
           K +F++C Q+ FCKR R   P     SL +  + +    L A+++           +   
Sbjct: 23  KEEFRSCDQTPFCKRARSRTP--GACSLIVGDVSITDGDLVAKLLPKAPNQGDGDQIKPL 80

Query: 369 AFKLSALADGTFRVELDEADPLYP 440
              LS   DG  R+++DE   L P
Sbjct: 81  ILSLSVYKDGIVRLKIDEDHSLNP 104


>At2g43240.1 68415.m05374 nucleotide-sugar transporter family
           protein weak similarity to SP|P78382 CMP-sialic acid
           transporter {Homo sapiens}; contains Pfam profile
           PF04142: Nucleotide-sugar transporter
          Length = 787

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +3

Query: 228 KRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFR 407
           KR RP +P +++ S         GN+LS    +   AD++   L     ++S LA+  F+
Sbjct: 473 KRRRP-RPRRNRKSNGSSYDHTDGNLLSISTSSPSGADDQSLSLTLDVHRISTLANYRFQ 531

Query: 408 VELDEADPLYPRYRT 452
           + LD +   +   +T
Sbjct: 532 LFLDSSKDAFSDLQT 546


>At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase
           iron-sulfur subunit, mitochondrial, putative / Rieske
           iron-sulfur protein, putative similar to
           ubiquinol--cytochrome-c reductase from Solanum tuberosum
           [SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
          Length = 274

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -1

Query: 430 GSASSSSTRNVPSASADNLKAYFHKTVRFSSAASMVT 320
           G  SSS++R+VPSA   +  +Y H++V    A+ ++T
Sbjct: 33  GGNSSSASRSVPSADLSSFNSY-HRSVIRGFASQVIT 68


>At3g02740.1 68416.m00266 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 488

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 240 PFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVLWKYAFKLSALADGTFRVELD 419
           P   + + YS+NL++I V  +VL       D+ D+K  ++      L  L D  +   L+
Sbjct: 276 PMLSKSAHYSVNLNAIEVGNSVLELSSNAFDSGDDKGVII-DSGTTLVYLPDAVYNPLLN 334

Query: 420 EADPLYP 440
           E    +P
Sbjct: 335 EILASHP 341


>At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 511

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 165 IIGISAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVVTIDA 335
           ++  + +  NKF   S    C RL      K  +SL +DS +    +LS+ +V + A
Sbjct: 132 MLSFTDIKPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYA 188


>At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 710

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 240 PFKPEKSQYSLNLDSILVHGNVLSAEV 320
           PFKP  S +   L+S  +HGNV   E+
Sbjct: 501 PFKPSASIWGSLLNSCRLHGNVSVGEI 527


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,197
Number of Sequences: 28952
Number of extensions: 205991
Number of successful extensions: 540
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)