Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1020
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 230 5e-62
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 230 6e-62
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 230 6e-62
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 123 1e-29
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 122 2e-29
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 75 4e-15
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 50 9e-08
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 40 9e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 40 9e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 40 2e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 39 2e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 0.046
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 30 0.13
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 29 0.17
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.53
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 1.2
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 1.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 1.6
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 2.1
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 2.8
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 3.7
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.7
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 24 6.5
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 6.5
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 6.5
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 24 8.6
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 8.6
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 8.6
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 230 bits (563), Expect = 5e-62
Identities = 106/115 (92%), Positives = 110/115 (95%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET KY VT+IDAPGHRD IKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 230 bits (562), Expect = 6e-62
Identities = 105/115 (91%), Positives = 110/115 (95%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET KY VT+IDAPGHRD IKNMITGTSQADCA+LI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILI 115
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 230 bits (562), Expect = 6e-62
Identities = 105/115 (91%), Positives = 110/115 (95%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET KY VT+IDAPGHRD IKNMITGTSQADCA+LI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILI 115
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 123 bits (296), Expect = 1e-29
Identities = 54/111 (48%), Positives = 77/111 (69%)
Frame = +2
Query: 35 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 214
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 215 ADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+RE+G T+++ FET +++DAPGH+ + NMI G SQAD VL+
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLV 346
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 122 bits (294), Expect = 2e-29
Identities = 56/111 (50%), Positives = 75/111 (67%)
Frame = +2
Query: 35 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 214
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 215 ADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+R RG+T+D+A FE+ K I DAPGHRD I MI G S AD AVL+
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLV 285
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 74.9 bits (176), Expect = 4e-15
Identities = 43/113 (38%), Positives = 62/113 (54%)
Frame = +2
Query: 29 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 208
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 209 LKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
++ RGITI A ++ET+ + +D PGH D IKNMITG + D A+++
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIV 146
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 50.4 bits (115), Expect = 9e-08
Identities = 34/107 (31%), Positives = 50/107 (46%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
N+ +I H+D+GK+T T ++Y G F + G V+D L A+R+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
RGITI+ A F + +ID PGH D + + D AV I
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAI 123
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 40.3 bits (90), Expect = 9e-05
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 193
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 194 WVLDKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ L A+ D+ + + + V +ID+PGH D + D A+++
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 40.3 bits (90), Expect = 9e-05
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYA 193
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 194 WVLDKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ L A+ D+ + + + V +ID+PGH D + D A+++
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVV 128
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 39.5 bits (88), Expect = 2e-04
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
N VI H+D GKST + ++ G I++ + F LDKL+ +R
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 227 RGITIDI----ALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
RGIT+ ++ + Y + +ID PGH D ++ + + +L+
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 39.1 bits (87), Expect = 2e-04
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ +RE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 227 RGITIDIA----LWK---------------FETSKYYVTIIDAPGHRDLIKNMITGTSQA 349
+GITI A W+ FE S Y + IID PGH D +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEKS-YNINIIDTPGHIDFTIEVERALRVL 169
Query: 350 DCAVLI 367
D AVL+
Sbjct: 170 DGAVLV 175
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect(2) = 0.046
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 170 GKGSFKYAWVLDKLKADRERGITIDIALWK--FETSKYYVTIIDAPGHRDLIKNMITGTS 343
GK + A+ + + GIT I + F+ ++T +D PGH G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 344 QADCAVLI 367
AD VL+
Sbjct: 243 IADIVVLV 250
Score = 22.2 bits (45), Expect(2) = 0.046
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 50 IVVIGHVDSGKST 88
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 29.9 bits (64), Expect = 0.13
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 278 YVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+V+ +D PGH L+ M+ G + D A+L+
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLL 138
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.5 bits (63), Expect = 0.17
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 240 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIPPH 112
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.1 bits (62), Expect = 0.23
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Frame = +2
Query: 56 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA--QEMGKGSFKYAWVLDKLKADRER 229
++GHVD+GK+ +L + +++ E Q++G F + K K ++
Sbjct: 489 ILGHVDTGKTKLLDNL-------RRSNVQEGEAGGITQQIGATYFPIESIKQKTKVVNKK 541
Query: 230 GITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
G K + + + IID PGH GTS + A+L+
Sbjct: 542 G--------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILV 579
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 0.53
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 217
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 218 DRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
I K Y + +ID+PGH D + + + D A ++
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVL 124
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 203 DKLKADR-ERGITIDIALWKFETSKYYV--TIIDAPGHRDLIKN 325
+K++A E+ + I+I + E +++ T+ID PG D I N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 1.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 264 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMV 133
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 230 HAHDQPLVCPIPKHI*RILYPFPGPPSRTSRWY 132
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 2.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 209 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWWWT 81
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 275 YYVTIIDAPGHRDLIKNMITGTS 343
Y+ ++ A ++DLI N+ITGTS
Sbjct: 262 YHTGVLRALLNQDLIPNVITGTS 284
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 3.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 164 PGPPSRTSRWYVCQYHHIC 108
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 334 CDHVLDQISVSRSINDGNIVLASFEL 257
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 230 GITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
G D ++K + + + + PGH DLI+++ S LI
Sbjct: 189 GCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLI 234
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 50 IVVIGHVDSGKSTTTGHLIYKC 115
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 53 VVIGHVDSGKSTTTGHLIYKCG 118
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 29 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKF 148
K T +I+ I + DSGK+ T +Y+ G I +F
Sbjct: 1379 KVTTSASIIAILNNDSGKTVTVKGTVYRDGKEVIEVISRF 1418
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 8.6
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 50 IVVIGHVDSGKSTTTGHLIYKCG 118
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 8.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 59 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 190
I HV G+ L + GG RTIE E E + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,613
Number of Sequences: 5004
Number of extensions: 26922
Number of successful extensions: 103
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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