Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1020
(369 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 125 1e-29
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 4e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 88 2e-18
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 57 4e-09
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 46 1e-05
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.018
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 35 0.024
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.13
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 32 0.13
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.89
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 28 2.1
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 2.7
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 27 6.3
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 27 6.3
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 26 8.3
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 125 bits (301), Expect = 1e-29
Identities = 56/60 (93%), Positives = 58/60 (96%)
Frame = +2
Query: 167 MGKGSFKYAWVLDKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQ 346
MGKGSFKYAWVLDKLKA+RERGITIDIALWKFET KYYVT+IDAPGHRD IKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 4e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 169
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 88.2 bits (209), Expect = 2e-18
Identities = 35/87 (40%), Positives = 60/87 (68%)
Frame = +2
Query: 107 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRERGITIDIALWKFETSKYYVT 286
Y G +DKRT+EK+E+EA+E + ++ +W LD + +R++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 287 IIDAPGHRDLIKNMITGTSQADCAVLI 367
++DAPGH+ + NMI+G +QAD VL+
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLV 252
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 57.2 bits (132), Expect = 4e-09
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +2
Query: 239 IDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+D+ L +F+T +T++DAPGH+D I NMITG +QAD A+L+
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILV 43
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/104 (25%), Positives = 49/104 (47%)
Frame = +2
Query: 56 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRERGI 235
+I H D+GK+T T L+ G I +EA + K D ++ +R+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 236 TIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
++ ++ F + I+D PGH+D ++ + D +++
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVV 109
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 35.1 bits (77), Expect = 0.018
Identities = 24/65 (36%), Positives = 31/65 (47%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
N ++ HVD GKST L+ G I K + K VLDKL+ +RE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 227 RGITI 241
RGIT+
Sbjct: 1987 RGITV 1991
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 34.7 bits (76), Expect = 0.024
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +2
Query: 20 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 193
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
Query: 194 WVLDKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITG 337
+ + L R G D+ +T++D PGH LIK +I G
Sbjct: 88 -LPEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG 122
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.13
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 118
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 32.3 bits (70), Expect = 0.13
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Frame = +2
Query: 44 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 196
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 197 VLDKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITG 337
+ + G +D A E+SK +T ID GH +K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 0.89
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 38 THINIVVIGHVDSGKSTTTGHLIY 109
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 232 TTLTISL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 232 TTLTISL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 437 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 206 KLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ K + ER ITI + Y +D PGH L+ M+ G + D A+L+
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLL 94
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 241 DCDTTLTISL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 232 TTLTISL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 232 TTLTISL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 26.2 bits (55), Expect = 8.3
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -3
Query: 358 SAISLRGSCDH-VLDQISVSRSIN-DGNIVLA---SFELPESNIDCDTTLTISL*FVQYP 194
SAIS S + ++ ++ S +N N +A + +++ TT+T S YP
Sbjct: 993 SAISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTASTSVVFPTTITPSPNITSYP 1052
Query: 193 SIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
S+ + + +F D T N T V +++
Sbjct: 1053 SLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 232 TTLTISL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 18 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 232 TTLTISL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 92
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 420 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 41 HINIVVIGHVDSGKSTTTGHLI 106
H+ VIGH+ ST GHLI
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLI 190
>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1564
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 101 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRER 229
L + CGG+++ +E QE+ F+Y +L+ RER
Sbjct: 740 LFFGCGGLNEMLSFLAVQEVQELVISVFRYLVMLEDRAQSRER 782
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,982,331
Number of Sequences: 59808
Number of extensions: 209857
Number of successful extensions: 515
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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