Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1020
(369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 239 4e-64
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 239 4e-64
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 239 4e-64
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 239 4e-64
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 144 2e-35
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 144 2e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 9e-34
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 129 7e-31
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 67 3e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 67 3e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 67 3e-12
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 64 4e-11
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 64 4e-11
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 52 2e-07
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 50 5e-07
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 46 8e-06
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 39 0.001
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 39 0.001
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 30 0.033
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 34 0.037
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 34 0.037
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.34
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.34
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.34
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.34
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 29 1.0
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 29 1.4
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 29 1.4
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 28 1.8
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 28 1.8
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 26 7.3
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 26 7.3
AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily a... 26 7.3
Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical p... 26 9.7
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 26 9.7
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 239 bits (585), Expect = 4e-64
Identities = 109/115 (94%), Positives = 113/115 (98%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY+TIIDAPGHRD IKNMITGTSQADCAVL+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 239 bits (585), Expect = 4e-64
Identities = 109/115 (94%), Positives = 113/115 (98%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY+TIIDAPGHRD IKNMITGTSQADCAVL+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 239 bits (585), Expect = 4e-64
Identities = 109/115 (94%), Positives = 113/115 (98%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY+TIIDAPGHRD IKNMITGTSQADCAVL+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 239 bits (585), Expect = 4e-64
Identities = 109/115 (94%), Positives = 113/115 (98%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY+TIIDAPGHRD IKNMITGTSQADCAVL+
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 144 bits (348), Expect = 2e-35
Identities = 63/112 (56%), Positives = 84/112 (75%)
Frame = +2
Query: 32 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 211
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 212 KADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ +RERG+T+DI FETS + ++DAPGH+D I NMITGTSQAD A+L+
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILV 278
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 144 bits (348), Expect = 2e-35
Identities = 63/112 (56%), Positives = 84/112 (75%)
Frame = +2
Query: 32 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 211
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 212 KADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ +RERG+T+DI FETS + ++DAPGH+D I NMITGTSQAD A+L+
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILV 296
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 9e-34
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 203 DKLKADR 223
DKLK +
Sbjct: 61 DKLKVTK 67
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 129 bits (311), Expect = 7e-31
Identities = 56/114 (49%), Positives = 81/114 (71%)
Frame = +2
Query: 26 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 205
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 206 KLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+RE+G T+++ FET K + TI+DAPGH+ + NMI G +QAD AVL+
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLV 217
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 67.3 bits (157), Expect = 3e-12
Identities = 39/113 (34%), Positives = 58/113 (51%)
Frame = +2
Query: 29 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 208
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 209 LKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
++ RGITI+ ++ET+K + ID PGH D IKNMITG +Q + A+L+
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 142
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 67.3 bits (157), Expect = 3e-12
Identities = 39/113 (34%), Positives = 58/113 (51%)
Frame = +2
Query: 29 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 208
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 209 LKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
++ RGITI+ ++ET+K + ID PGH D IKNMITG +Q + A+L+
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 143
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 67.3 bits (157), Expect = 3e-12
Identities = 39/113 (34%), Positives = 58/113 (51%)
Frame = +2
Query: 29 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 208
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 209 LKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
++ RGITI+ ++ET+K + ID PGH D IKNMITG +Q + A+L+
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 143
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 63.7 bits (148), Expect = 4e-11
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 35 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 208
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 209 LKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
K +++RGITI++A +E+ + D PGH D IKNMI GTSQ D AVL+
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 63.7 bits (148), Expect = 4e-11
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 35 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 208
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 209 LKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
K +++RGITI++A +E+ + D PGH D IKNMI GTSQ D AVL+
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 51.6 bits (118), Expect = 2e-07
Identities = 34/89 (38%), Positives = 45/89 (50%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI VI HVD+GK+T T L+Y G I A + KG+ V D L +RE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRD 313
RGIT+ A + + + +ID PGH D
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVD 102
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 50.0 bits (114), Expect = 5e-07
Identities = 34/107 (31%), Positives = 49/107 (45%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI + H+DSGK+T T ++Y G ID E+ +G +D + +R+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
RGITI A + + IID PGH D + D AVL+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLV 142
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 46.0 bits (104), Expect = 8e-06
Identities = 31/107 (28%), Positives = 47/107 (43%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
N ++ HVD GKST L+ CG + +K+ +LDKL+ +RE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
RGIT+ Y + +ID PGH D + + D +L+
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLL 132
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 39.1 bits (87), Expect = 0.001
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 175
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 176 GSFKYAWVLDKLKADRERG----ITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTS 343
+ + L+K + +G T+++ K + + + + +ID+PGH D +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 344 QADCAVLI 367
D A+++
Sbjct: 133 VTDGALVV 140
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 38.7 bits (86), Expect = 0.001
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 13/128 (10%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 175
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 176 GSFKYAWVLDKLKADRERG----ITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTS 343
+ + L+K + +G T+++ K + + + + +ID+PGH D +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 344 QADCAVLI 367
D A+++
Sbjct: 133 VTDGALVV 140
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 29.9 bits (64), Expect(2) = 0.033
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 170 GKGSFKYAWVLDKLKADRERGITIDIALWKFETSK-YYVTIIDAPGHRDLIKNMITGTSQ 346
GK + A ++ A GIT I + E +K VT +D PGH G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 347 ADCAVLI 367
AD VL+
Sbjct: 228 ADIVVLV 234
Score = 23.0 bits (47), Expect(2) = 0.033
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 50 IVVIGHVDSGKST 88
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 33.9 bits (74), Expect = 0.037
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 29 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 205
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 206 KLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ ++ RGIT+ + + +ID+PGH D + + +D A+L+
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLL 113
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 33.9 bits (74), Expect = 0.037
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Frame = +2
Query: 29 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 205
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 206 KLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ ++ RGIT+ + + +ID+PGH D + + +D A+L+
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLL 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 30.7 bits (66), Expect = 0.34
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 44 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADR 223
+N+ ++GHVDSGK+T T + E+G S A D
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHA-TSTTTDG 53
Query: 224 ERGITIDIALWKFET-SKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
R T+D+ + S + +ID PGH LI+ ++ ++ D A++I
Sbjct: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 30.7 bits (66), Expect = 0.34
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = +2
Query: 44 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADR 223
+N+ ++GHVDSGK+T T + E+G S A D
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHA-TSTTTDG 53
Query: 224 ERGITIDIALWKFET-SKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
R T+D+ + S + +ID PGH LI+ ++ ++ D A++I
Sbjct: 54 IRRNTLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVI 102
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 2 VIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 109
+IRD P K+ + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 2 VIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 109
+IRD P K+ + V+G+VD+GKST G L +
Sbjct: 128 IIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 29.1 bits (62), Expect = 1.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 278 YVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+V+ +D PGH L+ M+ G + D A L+
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLL 157
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 28.7 bits (61), Expect = 1.4
Identities = 24/107 (22%), Positives = 43/107 (40%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ + I + Y + IID PGH + M AD V++
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 231
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 28.7 bits (61), Expect = 1.4
Identities = 24/107 (22%), Positives = 43/107 (40%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ + I + Y + IID PGH + M AD V++
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVM 106
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 125 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
+KR ++ EKE + F Y LDK+K +R+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 125 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
+KR ++ EKE + F Y LDK+K +R+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 7.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 17 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 175
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 26.2 bits (55), Expect = 7.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 17 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 175
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 26.2 bits (55), Expect = 7.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 17 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGK 175
PK +EK I + +V+ G TTG +CGG ++ R + + AQE K
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWK 1353
>AF026213-6|AAB71307.1| 655|Caenorhabditis elegans Temporarily
assigned gene nameprotein 123 protein.
Length = 655
Score = 26.2 bits (55), Expect = 7.3
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = -2
Query: 122 YHHICRSNDQWWW 84
Y H+C + WWW
Sbjct: 570 YFHLCAEDYHWWW 582
>Z74473-4|CAA98953.1| 390|Caenorhabditis elegans Hypothetical
protein F56H9.4 protein.
Length = 390
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 29 KEKTHINIVVIGHVDSGKSTTTGHL-IYKCGG 121
++K + +++IG +SGKST + I CGG
Sbjct: 40 RKKKALKLLIIGPGESGKSTIVKQVRILHCGG 71
>Z70311-10|CAA94377.3| 602|Caenorhabditis elegans Hypothetical
protein T25B9.6 protein.
Length = 602
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 367 DEHSAISLRGSCDH-VLDQISVSRSINDGNIVLASFELPESNIDCDTTLTI 218
D HS+ L S DH +L +S SRS+ + E+ + ++D T L+I
Sbjct: 445 DHHSSYELSSSDDHSILPSLS-SRSVPNKIFENTVKEIVQDDLDLKTALSI 494
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 287 IIDAPGHRDLIKNMITGTSQADCAVLI 367
IID PGH G+S D A+L+
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILV 579
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,198,791
Number of Sequences: 27780
Number of extensions: 157764
Number of successful extensions: 494
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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