Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1020
(369 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 221 9e-59
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 221 9e-59
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 221 9e-59
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 221 9e-59
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 129 5e-31
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 113 3e-26
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 77 3e-15
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 71 2e-13
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 49 1e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 49 1e-06
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 48 3e-06
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 45 1e-05
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 42 1e-04
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 38 0.002
At5g13650.2 68418.m01585 elongation factor family protein contai... 35 0.015
At5g13650.1 68418.m01584 elongation factor family protein contai... 35 0.015
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 35 0.015
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 31 0.24
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 31 0.24
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 30 0.55
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 29 0.97
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 29 1.3
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 29 1.3
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 27 5.2
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 5.2
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 5.2
At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi... 26 6.8
At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ... 26 6.8
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi... 26 6.8
At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4 f... 26 9.0
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 26 9.0
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 26 9.0
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 26 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 221 bits (541), Expect = 9e-59
Identities = 103/115 (89%), Positives = 107/115 (93%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY T+IDAPGHRD IKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 221 bits (541), Expect = 9e-59
Identities = 103/115 (89%), Positives = 107/115 (93%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY T+IDAPGHRD IKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 221 bits (541), Expect = 9e-59
Identities = 103/115 (89%), Positives = 107/115 (93%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY T+IDAPGHRD IKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 221 bits (541), Expect = 9e-59
Identities = 103/115 (89%), Positives = 107/115 (93%)
Frame = +2
Query: 23 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 202
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 203 DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
DKLKA+RERGITIDIALWKFET+KYY T+IDAPGHRD IKNMITGTSQADCAVLI
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLI 115
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 129 bits (312), Expect = 5e-31
Identities = 52/110 (47%), Positives = 82/110 (74%)
Frame = +2
Query: 38 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 217
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 218 DRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+RERGIT+ +A+ F + +++V ++D+PGH+D + NMI G +QAD A+L+
Sbjct: 298 ERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILV 347
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 113 bits (272), Expect = 3e-26
Identities = 49/112 (43%), Positives = 77/112 (68%)
Frame = +2
Query: 32 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 211
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 212 KADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ +R +G T+++ FET TI+DAPGH+ + NMI+G SQAD VL+
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLV 209
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 77.4 bits (182), Expect = 3e-15
Identities = 42/116 (36%), Positives = 61/116 (52%)
Frame = +2
Query: 20 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 199
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 200 LDKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+D +R RGITI+ A ++ET + +D PGH D +KNMITG +Q D A+L+
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILV 172
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 71.3 bits (167), Expect = 2e-13
Identities = 41/113 (36%), Positives = 59/113 (52%)
Frame = +2
Query: 29 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 208
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 107
Query: 209 LKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+++RGITI A ++ET+K + +D PGH D +KNMITG +Q D +L+
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILV 160
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 48.8 bits (111), Expect = 1e-06
Identities = 35/107 (32%), Positives = 51/107 (47%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + +RE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+GITI A Y V IID PGH D + D A+L+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILV 163
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 48.8 bits (111), Expect = 1e-06
Identities = 35/107 (32%), Positives = 51/107 (47%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + +RE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+GITI A Y V IID PGH D + D A+L+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILV 163
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 47.6 bits (108), Expect = 3e-06
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +2
Query: 35 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 214
K + NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----ME 140
Query: 215 ADRERGITIDIALWKFETSKYYVTIIDAPGHRD 313
++ERGITI A K+ + IID PGH D
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVD 173
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 45.2 bits (102), Expect = 1e-05
Identities = 31/107 (28%), Positives = 49/107 (45%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI ++ HVD GK+T HLI GG + GK F +D L ++
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
R IT+ + + Y + +ID+PGH D + T +D A+++
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVL 104
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 41.9 bits (94), Expect = 1e-04
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
N +I H+D GKST L+ G + R + K F LD + +RE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 227 RGITIDIAL----WKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
RGITI + + +E + + + +ID PGH D + + + A+L+
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLV 182
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 37.9 bits (84), Expect = 0.002
Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Frame = +2
Query: 11 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 190
D K EK N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 191 AWVLDKLKADRERGITI---------DIALWKFETSKYYVTIIDAPGHRDLIKNMITGTS 343
LDKL+ RERGIT+ + + E S Y + +ID PGH D + S
Sbjct: 103 ---LDKLQ--RERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLS 157
Query: 344 QADCAVLI 367
A+L+
Sbjct: 158 ACQGALLV 165
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 35.1 bits (77), Expect = 0.015
Identities = 27/89 (30%), Positives = 39/89 (43%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI ++ HVD GK+T ++ + K ++ Q M + ++D +RE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRD 313
RGITI V IID PGH D
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSD 158
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 35.1 bits (77), Expect = 0.015
Identities = 27/89 (30%), Positives = 39/89 (43%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKADRE 226
NI ++ HVD GK+T ++ + K ++ Q M + ++D +RE
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRD 313
RGITI V IID PGH D
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSD 157
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 35.1 bits (77), Expect = 0.015
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKYAWVLDKLK 214
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 215 ADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
E ++ + ++Y + +ID+PGH D + D A+++
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVV 128
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 31.1 bits (67), Expect = 0.24
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Frame = +2
Query: 17 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 187
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 188 YAWVLDKLK---------ADRERGITIDIALWKF--ETSKYYVTIIDAPGHRDLIKNMIT 334
Y DK + +E T D+ ++ T + +V+ +D PGH L+ M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 335 GTSQADCAVLI 367
G + D A+L+
Sbjct: 147 GAAIVDGALLL 157
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 31.1 bits (67), Expect = 0.24
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 14/131 (10%)
Frame = +2
Query: 17 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 187
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 188 YAWVLDKLK---------ADRERGITIDIALWKF--ETSKYYVTIIDAPGHRDLIKNMIT 334
Y DK + +E T D+ ++ T + +V+ +D PGH L+ M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 335 GTSQADCAVLI 367
G + D A+L+
Sbjct: 147 GAAIVDGALLL 157
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 29.9 bits (64), Expect = 0.55
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Frame = +2
Query: 17 PKMGKEKTHINIVVIGHVDSGKST----TTG-HLIYKCGGIDKR-TIEKFEKEAQEMGKG 178
P++ + INI IGHV GKST +G H + +++ TI+ A+
Sbjct: 25 PEVISRQATINIGTIGHVAHGKSTIVKAVSGVHTVKFKSELERNITIKLGYANAKIYKCE 84
Query: 179 SFKYAWVLDKLKADRERGITIDIALWKFETSKY--YVTIIDAPGHRDLIKNMITGTSQAD 352
+ +E + D++ + K +V+ +D PGH L+ M+ G + D
Sbjct: 85 KCPRPVAYKSFGSGKEDNPSCDVSGHEKYKMKLLRHVSFVDCPGHDILMATMLNGAAIMD 144
Query: 353 CAVLI 367
A+LI
Sbjct: 145 GALLI 149
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 29.1 bits (62), Expect = 0.97
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 260 FETSKY----YVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
FE SK +V+ +D PGH L+ M+ G + D A+L+
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLL 151
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ + + + L + Y I+D PGH + M AD AVLI
Sbjct: 193 KAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLI 239
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 227 RGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMITGTSQADCAVLI 367
+ + + + L + Y I+D PGH + M AD AVLI
Sbjct: 193 KAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLI 239
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 200 IPKHI*RILYPFPGPPSRTSRWYVC 126
+P H+ L GPPS +SR Y C
Sbjct: 110 LPSHVPTYLKAAVGPPSSSSRRYFC 134
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 169
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 47 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 169
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 982
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +2
Query: 173 KGSFKYAWVL------DKLKADRERGITIDIALWKFETSKYYVTIIDAPGHRDLIKNMI 331
KG FK+++ L + +K D IT+ LW+ K +I PG L++ +I
Sbjct: 700 KGDFKFSFTLFGLMGENDIKHDHIAYITLLSGLWRAMARKKKRQVIVEPGKEKLLQRLI 758
>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
Homo sapiens, EMBL:HSU81006
Length = 627
Score = 26.2 bits (55), Expect = 6.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2
Query: 131 VCQYHHICRSNDQWWW 84
V Y H+C + +WWW
Sbjct: 538 VLTYMHLCVEDYKWWW 553
>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1322
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 361 HSAISLRGSCDHVLDQISVSRSINDGNI 278
HS ++ S +++LD + S S DGN+
Sbjct: 433 HSHLTFESSSENLLDAVVASMSNGDGNV 460
>At4g12650.1 68417.m01990 endomembrane protein 70, putative TM4
family;
Length = 527
Score = 25.8 bits (54), Expect = 9.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -2
Query: 131 VCQYHHICRSNDQWWW 84
V Y H+C + +WWW
Sbjct: 438 VLTYMHLCVEDWRWWW 453
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 287 IIDAPGHRDLIKNMITGTSQADCAVLI 367
+ID PGH G+S D A+L+
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILV 139
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 287 IIDAPGHRDLIKNMITGTSQADCAVLI 367
+ID PGH G+S D A+L+
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILV 798
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 287 IIDAPGHRDLIKNMITGTSQADCAVLI 367
+ID PGH G+S D A+L+
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILV 731
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,731,544
Number of Sequences: 28952
Number of extensions: 146665
Number of successful extensions: 460
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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