Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1018
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    26   0.21 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.5  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   2.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.0  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   2.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   3.5  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   6.1  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   6.1  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   6.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   6.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   6.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   6.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   6.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   6.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   6.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   6.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   6.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   6.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.0  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 3   ISEGNETVEDIAARLNIPVSEVNPREAKAAVVHGTELRELNSDQL 137
           +  GN++   I   +NI +S+ N  + K       EL  L SD L
Sbjct: 126 LKPGNQSTPGIKLSINIILSDPNTNKLKLNTNESYELTVLKSDSL 170


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 506 PGYSNHPLHRSGNGHGARHFP 568
           P Y+++  H SG+G    H P
Sbjct: 386 PNYNHYGYHYSGDGGEVAHLP 406


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 506 PGYSNHPLHRSGNGHGARHFP 568
           P Y+++  H SG+G    H P
Sbjct: 334 PNYNHYGYHYSGDGGEVAHLP 354


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -2

Query: 511 PRGRGMSQRMKARKGEISGMFEVRV*AIDFFKLSKISRPSSTPVTMDAKLSSSRIMSAA 335
           PR   +++ +   + +I   F+ R       +++K+S P S+P    + LS   + S A
Sbjct: 116 PRRIQIAENLNLSERQIKIWFQNRRMKHKKEQMNKVSTPRSSPAETASSLSPQSVASTA 174


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
 Frame = +2

Query: 65  GESPRSQSRCRPRNRAPRTELR----PAR*DPQVPHRNRVRPHLPATEAD 202
           G++P  ++   PR R   T+ +    P R  P +      RP  PA   +
Sbjct: 303 GQNPGEKTNIAPRERPRATDHQRRNEPKRPRPNIDRHEVTRPAAPANRGN 352


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -2

Query: 511 PRGRGMSQRMKARKGEISGMFEVRV*AIDFFKLSKISRPSSTPVTMDAKLSSSRIMSAA 335
           PR   +++ +   + +I   F+ R       +++K+S P S+P    + LS   + S A
Sbjct: 107 PRRIQIAENLNLSERQIKIWFQNRRMKHKKEQMNKVSTPRSSPAETASSLSPQSVASTA 165


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 473 PCLHPLRHSSAPGYSNHPLHRSGNGHGARHFPG 571
           P L  L HS    ++ HP H +     A H  G
Sbjct: 34  PGLQGLHHSPHLNHAMHPYHANHVNPTANHVMG 66


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 402 LIFDNLKKSIAYTLTSNIPEISPFLAF 482
           L++    K  +Y  + N+P   PFL F
Sbjct: 12  LLYYIYSKHYSYWQSKNVPTDKPFLFF 38


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 143 DPQVPHRNRVRPHLPAT 193
           DP++P R  + P  P+T
Sbjct: 47  DPEMPKRMYIHPDSPST 63


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 143 DPQVPHRNRVRPHLPAT 193
           DP++P R  + P  P+T
Sbjct: 47  DPEMPKRMYIHPDSPST 63


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 588 IQHPRKPGKWRAPCPFPDR 532
           +Q+PR  G + AP P  D+
Sbjct: 1   LQYPRSVGVYGAPYPSTDQ 19


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 503 APGYSNHPLHRSGNGHG 553
           AP Y  HP      GHG
Sbjct: 49  APQYPQHPYAAPAPGHG 65


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 226 RRWQPSTM 203
           RRW PSTM
Sbjct: 618 RRWMPSTM 625


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 226 RRWQPSTM 203
           RRW PSTM
Sbjct: 851 RRWMPSTM 858


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 226 RRWQPSTM 203
           RRW PSTM
Sbjct: 851 RRWMPSTM 858


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,789
Number of Sequences: 336
Number of extensions: 2897
Number of successful extensions: 25
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)