Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1018
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.57 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 390 EEGRLIFDNLKKSIAYTLTSNIPEISPFLAFIL 488
           + G +I D  + S+ +TL  +  EIS  L F+L
Sbjct: 200 KNGSVILDTARCSMKWTLIEHAFEISTMLFFVL 232


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 592  SDSASS*AREMAGTMSVPRSMQRMV 518
            SDS SS     AGT+S  +  +RMV
Sbjct: 1071 SDSGSSNGSWTAGTVSQQKQKRRMV 1095


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 297 VAMGIAGSDVSKQAADMILLD 359
           VA+G+   +V ++AAD  LL+
Sbjct: 11  VALGVCAPNVKQRAADQDLLN 31


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 100 WTTAALASRGFTSETGIFKRAAMSSTVSL 14
           +TT  +    FT ++GIF  A    T +L
Sbjct: 235 YTTFTINGESFTLQSGIFGMALSPLTQNL 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,727
Number of Sequences: 438
Number of extensions: 3392
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)