Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1017
         (697 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1TKS5 Cluster: TPR repeat-containing protein; n=1; Aci...    37   0.54 
UniRef50_Q59IS5 Cluster: Ataxia telangiectasia mutated; n=13; ce...    36   0.72 
UniRef50_Q582G5 Cluster: Putative uncharacterized protein; n=1; ...    34   3.8  
UniRef50_A4EAW1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q84QT3 Cluster: Putative uncharacterized protein P0410E...    33   5.1  

>UniRef50_A1TKS5 Cluster: TPR repeat-containing protein; n=1;
           Acidovorax avenae subsp. citrulli AAC00-1|Rep: TPR
           repeat-containing protein - Acidovorax avenae subsp.
           citrulli (strain AAC00-1)
          Length = 1084

 Score = 36.7 bits (81), Expect = 0.54
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 410 GIEEPP-AAKPCCPLHRAHRPRSPSTRCRAAAVPLSLYRNET 532
           G  EPP  A P CP  R H  RSP    RAA  P SL+RN +
Sbjct: 105 GAHEPPKTAVPPCPCARPHH-RSPPPPGRAAGRPCSLFRNSS 145


>UniRef50_Q59IS5 Cluster: Ataxia telangiectasia mutated; n=13;
            cellular organisms|Rep: Ataxia telangiectasia mutated -
            Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 2773

 Score = 36.3 bits (80), Expect = 0.72
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 342  ALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQRDAVL----LLCH 509
            ALVNA +D +   SR    K +    SP    RA +  ++ID  R +R  ++    +LC+
Sbjct: 2283 ALVNANKDDSFSRSR--SSKSSARQPSPLDLERAEVARKIIDVVRKKRAKMVKDIEMLCN 2340

Query: 510  SHFTATRPSDSTYPSHKHAVPI 575
            ++ T      S + + K A+PI
Sbjct: 2341 AYITLAYMDASRHKTEKKAIPI 2362


>UniRef50_Q582G5 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 1178

 Score = 33.9 bits (74), Expect = 3.8
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +2

Query: 404 CGGIEEPPAAKPCCPLHRAHRPRSPSTR 487
           C G   PP A P  P  RAHRP S S R
Sbjct: 36  CNGSPSPPIASPSSPSLRAHRPNSRSFR 63


>UniRef50_A4EAW1 Cluster: Putative uncharacterized protein; n=1;
           Collinsella aerofaciens ATCC 25986|Rep: Putative
           uncharacterized protein - Collinsella aerofaciens ATCC
           25986
          Length = 417

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +3

Query: 267 QKFTWRARSIAPQ*KAARQLRRRHDALVNARRDSTECASRRGDEKD 404
           Q+    +R+ A Q +AAR+LR R DA V    +  E AS   DEKD
Sbjct: 122 QRIERASRATAGQIRAARKLRGRIDAGVQVTLEQLEAASAFEDEKD 167


>UniRef50_Q84QT3 Cluster: Putative uncharacterized protein
           P0410E11.130; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0410E11.130 - Oryza sativa subsp. japonica (Rice)
          Length = 95

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 504 CHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKN-RSRC 620
           CH+H    R     +   K  +P++T WTTS S+   +RC
Sbjct: 39  CHAHHQVVRMCFQDFDGKKIGMPLSTGWTTSTSRRLGARC 78


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,207,920
Number of Sequences: 1657284
Number of extensions: 12633764
Number of successful extensions: 31536
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31516
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)