Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1017
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.5  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    22   5.5  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   5.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 2    PPPRAAKITRTVQAHRLLYVTNPVTL*NKPYQTY 103
            PP +A   T T Q  R+ +V+ P+T  N   + Y
Sbjct: 1103 PPDKATCTTLTAQTIRVSWVSPPLTAANGVIKGY 1136


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 411 PPHPFHRP 388
           PPHP H+P
Sbjct: 738 PPHPHHQP 745


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 411 PPHPFHRP 388
           PPHP H+P
Sbjct: 630 PPHPHHQP 637


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 92  YQTYCFGTRREHVFS 136
           Y  YC+ T ++H++S
Sbjct: 18  YLFYCYKTIKQHIYS 32


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 92  YQTYCFGTRREHVFS 136
           Y  YC+ T ++H++S
Sbjct: 18  YLFYCYKTIKQHIYS 32


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 102 TVSGQDASTCFHLDAV 149
           T++  D++ C HLDA+
Sbjct: 416 TINECDSNPCKHLDAI 431


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,135
Number of Sequences: 336
Number of extensions: 3168
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)