Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1017
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    29   0.48 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.5  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    27   1.9  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   7.8  

>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 100 SLIWFILECDWISDVEQPVSLYCACYFSSARRR 2
           +L W ++  D    V+Q +SL+C+ Y  S  RR
Sbjct: 45  NLAWALVRSDSTQHVQQGLSLFCSIYKDSPERR 77


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 66  IQSHSKINHIKLTVSGQDASTCFHLDAVSPAS 161
           ++ H+K  H K T S QDA+   HL + SP S
Sbjct: 665 LKRHAKKLHEKKTKSSQDATIDHHLTSHSPES 696


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 313 AFYCGAILRARHVNFCVDLKTKRTLNCLSQSDFLETLI 200
           AF C A L  RH  +C   +T   L  L + D  ET I
Sbjct: 20  AFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFI 57


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 339 DALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQRDAVLLL 503
           D  V+++R   +   R+  EK   E +    +NRAAL I+++  +   +D  LLL
Sbjct: 152 DPFVSSQRLRKQFRERKKIEKKQ-EAKDLSLKNRAALDIDILPPSSSDKDKALLL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,901
Number of Sequences: 5004
Number of extensions: 51471
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)