BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1017 (697 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 29 0.48 SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.5 SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 27 1.9 SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 25 7.8 >SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 160 Score = 29.5 bits (63), Expect = 0.48 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -1 Query: 100 SLIWFILECDWISDVEQPVSLYCACYFSSARRR 2 +L W ++ D V+Q +SL+C+ Y S RR Sbjct: 45 NLAWALVRSDSTQHVQQGLSLFCSIYKDSPERR 77 >SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 798 Score = 27.9 bits (59), Expect = 1.5 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 66 IQSHSKINHIKLTVSGQDASTCFHLDAVSPAS 161 ++ H+K H K T S QDA+ HL + SP S Sbjct: 665 LKRHAKKLHEKKTKSSQDATIDHHLTSHSPES 696 >SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharomyces pombe|chr 2|||Manual Length = 162 Score = 27.5 bits (58), Expect = 1.9 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -1 Query: 313 AFYCGAILRARHVNFCVDLKTKRTLNCLSQSDFLETLI 200 AF C A L RH +C +T L L + D ET I Sbjct: 20 AFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFI 57 >SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosaccharomyces pombe|chr 2|||Manual Length = 294 Score = 25.4 bits (53), Expect = 7.8 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = +3 Query: 339 DALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQRDAVLLL 503 D V+++R + R+ EK E + +NRAAL I+++ + +D LLL Sbjct: 152 DPFVSSQRLRKQFRERKKIEKKQ-EAKDLSLKNRAALDIDILPPSSSDKDKALLL 205 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,661,901 Number of Sequences: 5004 Number of extensions: 51471 Number of successful extensions: 106 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 106 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -