BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1017 (697 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_0315 + 15680170-15680304,15681166-15681318 33 0.16 06_03_1139 + 27925970-27925985,27926427-27927079 33 0.29 06_03_1138 - 27913795-27914274 32 0.50 10_08_0876 - 21223097-21223645 31 0.87 10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150... 28 6.2 03_05_0089 - 20669197-20669280,20669944-20670030,20670143-206702... 28 6.2 04_03_0928 + 20882398-20882689,20882840-20882958,20883208-208833... 28 8.1 01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 28 8.1 >08_02_0315 + 15680170-15680304,15681166-15681318 Length = 95 Score = 33.5 bits (73), Expect = 0.16 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +3 Query: 504 CHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKN-RSRC 620 CH+H R + K +P++T WTTS S+ +RC Sbjct: 39 CHAHHQVVRMCFQDFDGKKIGMPLSTGWTTSTSRRLGARC 78 >06_03_1139 + 27925970-27925985,27926427-27927079 Length = 222 Score = 32.7 bits (71), Expect = 0.29 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -1 Query: 178 DWCVQQEAGDTASR*KHVLASCPETVSLIWFILECDWISDV 56 D CV + GD H+L +CPE+ L WF L +SD+ Sbjct: 129 DRCVLCDQGDETI--DHLLVACPESRQLWWFALRAIGLSDI 167 >06_03_1138 - 27913795-27914274 Length = 159 Score = 31.9 bits (69), Expect = 0.50 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -1 Query: 178 DWCVQQEAGDTASR*KHVLASCPETVSLIWFILECDWISDV 56 D CV + GD H+L +CPE+ L WF L +SD+ Sbjct: 28 DRCVLCDQGDETI--DHLLVACPESRQLWWFALRAIGLSDM 66 >10_08_0876 - 21223097-21223645 Length = 182 Score = 31.1 bits (67), Expect = 0.87 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Frame = -3 Query: 539 VRRSRCGKVRVAQQQHGIALRASAVDELD-AEGSTVSLRGAPLFPRILFI 393 V R G+VR AQ QHG + AS D +D G V L + P L I Sbjct: 130 VCRVIAGRVRSAQHQHGHSRHASDYDSVDMGNGELVVLDSRAVLPCFLII 179 >10_06_0136 - 11114409-11114576,11114656-11114784,11114873-11115016, 11115130-11115299,11116441-11116528,11116590-11116652, 11116678-11116799,11118506-11118671 Length = 349 Score = 28.3 bits (60), Expect = 6.2 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +2 Query: 422 PPAAKPCCPLHRAHR-PRSPSTRCRAA 499 PP P P R HR P S +T CRAA Sbjct: 22 PPPPLPVSPSPRHHRRPHSTATACRAA 48 >03_05_0089 - 20669197-20669280,20669944-20670030,20670143-20670261, 20670838-20671076,20671159-20671215,20671564-20672195, 20673172-20673213,20675849-20676133 Length = 514 Score = 28.3 bits (60), Expect = 6.2 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -1 Query: 118 SCPETVSLIWFILECDWISDVEQ 50 +C +T L+W L DW ++VE+ Sbjct: 468 TCMQTAILVWVTLRTDWNNEVEE 490 >04_03_0928 + 20882398-20882689,20882840-20882958,20883208-20883330, 20883768-20883866,20883978-20884022,20884295-20884390 Length = 257 Score = 27.9 bits (59), Expect = 8.1 Identities = 21/46 (45%), Positives = 25/46 (54%) Frame = +3 Query: 489 AVLLLCHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKNRSRCLF 626 +VLLL S F RPS P+H+ IAT+ TTS S R LF Sbjct: 5 SVLLLLPSPFL--RPSS---PAHRARCGIATTTTTSTSGRRGLFLF 45 >01_06_1133 + 34781799-34782071,34782168-34783166,34783252-34783663, 34783727-34784670 Length = 875 Score = 27.9 bits (59), Expect = 8.1 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 505 ATLTLPQRDLLT-QPILHINMQYR*LLLGLRV 597 AT+ PQR LLT + + H+ + Y L+GL + Sbjct: 108 ATMVFPQRSLLTLETVAHLGLLYFLFLVGLEM 139 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,626,062 Number of Sequences: 37544 Number of extensions: 378173 Number of successful extensions: 1092 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1092 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1780264028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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