Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1017
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0315 + 15680170-15680304,15681166-15681318                       33   0.16 
06_03_1139 + 27925970-27925985,27926427-27927079                       33   0.29 
06_03_1138 - 27913795-27914274                                         32   0.50 
10_08_0876 - 21223097-21223645                                         31   0.87 
10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150...    28   6.2  
03_05_0089 - 20669197-20669280,20669944-20670030,20670143-206702...    28   6.2  
04_03_0928 + 20882398-20882689,20882840-20882958,20883208-208833...    28   8.1  
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836...    28   8.1  

>08_02_0315 + 15680170-15680304,15681166-15681318
          Length = 95

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 504 CHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKN-RSRC 620
           CH+H    R     +   K  +P++T WTTS S+   +RC
Sbjct: 39  CHAHHQVVRMCFQDFDGKKIGMPLSTGWTTSTSRRLGARC 78


>06_03_1139 + 27925970-27925985,27926427-27927079
          Length = 222

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 178 DWCVQQEAGDTASR*KHVLASCPETVSLIWFILECDWISDV 56
           D CV  + GD      H+L +CPE+  L WF L    +SD+
Sbjct: 129 DRCVLCDQGDETI--DHLLVACPESRQLWWFALRAIGLSDI 167


>06_03_1138 - 27913795-27914274
          Length = 159

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 178 DWCVQQEAGDTASR*KHVLASCPETVSLIWFILECDWISDV 56
           D CV  + GD      H+L +CPE+  L WF L    +SD+
Sbjct: 28  DRCVLCDQGDETI--DHLLVACPESRQLWWFALRAIGLSDM 66


>10_08_0876 - 21223097-21223645
          Length = 182

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 539 VRRSRCGKVRVAQQQHGIALRASAVDELD-AEGSTVSLRGAPLFPRILFI 393
           V R   G+VR AQ QHG +  AS  D +D   G  V L    + P  L I
Sbjct: 130 VCRVIAGRVRSAQHQHGHSRHASDYDSVDMGNGELVVLDSRAVLPCFLII 179


>10_06_0136 -
           11114409-11114576,11114656-11114784,11114873-11115016,
           11115130-11115299,11116441-11116528,11116590-11116652,
           11116678-11116799,11118506-11118671
          Length = 349

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 422 PPAAKPCCPLHRAHR-PRSPSTRCRAA 499
           PP   P  P  R HR P S +T CRAA
Sbjct: 22  PPPPLPVSPSPRHHRRPHSTATACRAA 48


>03_05_0089 -
           20669197-20669280,20669944-20670030,20670143-20670261,
           20670838-20671076,20671159-20671215,20671564-20672195,
           20673172-20673213,20675849-20676133
          Length = 514

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 118 SCPETVSLIWFILECDWISDVEQ 50
           +C +T  L+W  L  DW ++VE+
Sbjct: 468 TCMQTAILVWVTLRTDWNNEVEE 490


>04_03_0928 +
           20882398-20882689,20882840-20882958,20883208-20883330,
           20883768-20883866,20883978-20884022,20884295-20884390
          Length = 257

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/46 (45%), Positives = 25/46 (54%)
 Frame = +3

Query: 489 AVLLLCHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKNRSRCLF 626
           +VLLL  S F   RPS    P+H+    IAT+ TTS S  R   LF
Sbjct: 5   SVLLLLPSPFL--RPSS---PAHRARCGIATTTTTSTSGRRGLFLF 45


>01_06_1133 +
           34781799-34782071,34782168-34783166,34783252-34783663,
           34783727-34784670
          Length = 875

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 505 ATLTLPQRDLLT-QPILHINMQYR*LLLGLRV 597
           AT+  PQR LLT + + H+ + Y   L+GL +
Sbjct: 108 ATMVFPQRSLLTLETVAHLGLLYFLFLVGLEM 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,062
Number of Sequences: 37544
Number of extensions: 378173
Number of successful extensions: 1092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)