Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1017
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              32   0.39 
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  30   2.1  
SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 130  HVLASCPETVSLIWFILECDWISDVEQPVSLYCACYF 20
            + L    E   L+WF+ EC   + V+Q V LYC C F
Sbjct: 2157 YALYGLTERAMLVWFVSEC---AVVKQGVMLYCECRF 2190


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 258 KSTQKFTWRARSIAPQ*KAARQLRRRHDALVNARR---DSTECASRRGDEKDAGE*RSPP 428
           +S +K    +RS +P+ K +R  R+R  +   + R   DS+ C  RR   +         
Sbjct: 273 RSHRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLR 332

Query: 429 QRNRAALCIELIDRARPQR 485
            R+R+   I    R+RP R
Sbjct: 333 SRSRSPYRIRYRSRSRPPR 351


>SB_19217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 504 CHSHFTATRPSDSTYPSHKHAVPIATS 584
           CH H  A+RP+ +   + +HA P+  S
Sbjct: 53  CHRHSMASRPNSAQSSAFRHATPLDLS 79


>SB_40869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 501 LCHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKNRSRCLFH---REYFVATISFM 662
           L HSH      S     +H H   +A S T  ++ + ++CL H   RE  V  +S M
Sbjct: 309 LAHSHTKGLAHSHIKGLAHGHTKGLAHSHTKGLAHSHTKCLAHSRPREKAVQALSAM 365


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,927,703
Number of Sequences: 59808
Number of extensions: 418260
Number of successful extensions: 1143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)