Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1017
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    29   4.2  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    29   4.2  

>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 333 RHDALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQR 485
           RHD+    RRDS+  +S      D  E R   +   ++     +++ RP+R
Sbjct: 495 RHDSRSRRRRDSSSSSSMSSSSSDEDERRRKRREKESSKKRRSVEKERPRR 545


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 372  ECASRRGDEKDAGE*RSPPQRNRAAL--CIELIDRARPQRDAVLLLCHSHFTATRPSDST 545
            E  SRR  +++AGE  +PP   R       E  D    +  A+ L  H   + T P+ + 
Sbjct: 1537 EYNSRRSQKREAGECSTPPAVTRRGFIPSTEGEDLVNVELSAIPLDDHPSSSNTAPTTTI 1596

Query: 546  YPSHKHAVPIATSWTTSMSKNRSR 617
             PS   A P  TS        RSR
Sbjct: 1597 APSVGGA-PKPTSVVVKSPSTRSR 1619


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 372  ECASRRGDEKDAGE*RSPPQRNRAAL--CIELIDRARPQRDAVLLLCHSHFTATRPSDST 545
            E  SRR  +++AGE  +PP   R       E  D    +  A+ L  H   + T P+ + 
Sbjct: 1516 EYNSRRSQKREAGECSTPPAVTRRGFIPSTEGEDLVNVELSAIPLDDHPSSSNTAPTTTI 1575

Query: 546  YPSHKHAVPIATSWTTSMSKNRSR 617
             PS   A P  TS        RSR
Sbjct: 1576 APSVGGA-PKPTSVVVKSPSTRSR 1598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,372
Number of Sequences: 27780
Number of extensions: 303150
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)